The directory WGBS_pipeline/Arioc/temp_encoded_reads/ is used to store encoded reads (Arioc) for a dataset. This is true independent of the choice of working directory (-w flag to nextflow), and results in large files quickly building up in an awkward/ unexpected location.
The directory
WGBS_pipeline/Arioc/temp_encoded_reads/is used to store encoded reads (Arioc) for a dataset. This is true independent of the choice of working directory (-wflag to nextflow), and results in large files quickly building up in an awkward/ unexpected location.