The current approach is to write the final 2 merged bsseq objects to a single directory, using the HDF5Array package to give each object a separate prefix ("CpG" and "CpH") when storing assays in .h5 files. However, bsseq currently does not correctly smooth objects given a prefix, so the final "CpG" bsseq object is not smoothed as desired.
The current approach is to write the final 2 merged bsseq objects to a single directory, using the
HDF5Arraypackage to give each object a separateprefix("CpG" and "CpH") when storing assays in.h5files. However,bsseqcurrently does not correctly smooth objects given a prefix, so the final "CpG" bsseq object is not smoothed as desired.