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LieberInstitute / Habenula_Pilot

habenulaPilot project code repository
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Cross Species Correlation Analysis #9

Closed lahuuki closed 8 months ago

lahuuki commented 1 year ago

Goal: check for correlation between our habenula cell type annotations, and annotations from Mouse

Use tools from spatialLIBD to complete enrichment DE analysis and compare stats between datasets.

Final product will be a heatmap comparing our habenula cell types to cell type in the mouse dataset. See Fig 1F in Tran, Maynard et al.

lahuuki commented 1 year ago

@ajanakub encountered an issue with the Wallace et al. dataset, the downloadable data is missing the cell type annotations we'd need to complete this analysis. We may need to check for data in the papers github or contact the authors.

lahuuki commented 1 year ago

Hashawaki et al. https://pubmed.ncbi.nlm.nih.gov/32272058/ - https://www.github.com/stuberlab/