Looking for "Ground Truth"

LieberInstitute / HumanPilot

Spatial Transcriptomics human DLPFC pilot study part of the spatialLIBD project

https://doi.org/10.1038/s41593-020-00787-0

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Looking for "Ground Truth" #10

Closed edgarfelizmenio closed 3 months ago

edgarfelizmenio commented 7 months ago

Hello, I am currently exploring the dataset for a project that I am doing but I can't seem to find a comprehensive documentation on the available data. I am specifically looking for the ground truth but I am not quite sure if I can use layer_guess.

Any help would be appreciated.

Thanks!

lcolladotor commented 3 months ago

Hi @edgarfelizmenio,

The manual annotations are in the spe$spatialLIBD as well as layer_guess (and a few other related names). As for documentation, it's available at http://spatial.libd.org/spatialLIBD/ as well as https://github.com/LieberInstitute/spatialLIBD/blob/devel/inst/app/www/documentation_spe.md#common-options.

Best, Leonardo