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LieberInstitute / HumanPilot

Spatial Transcriptomics human DLPFC pilot study part of the spatialLIBD project
https://doi.org/10.1038/s41593-020-00787-0
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Spatially-registered DLPFC snRNA-seq data from paper? #6

Closed bhavyaac closed 2 years ago

bhavyaac commented 2 years ago

Hello! Thank you for your great work on this package. I found it very easy to use and your documentation is excellent. I have a question regarding the data availability from your paper. In your paper (Maynard et al 2021 Nat. Neurosci), you spatially registered three independent snRNA-seq datasets, and one of these datasets was generated by your research team. I am wondering whether this annotated snRNA-seq dataset is publicly available. (From my understanding, the raw data provided at the Globus link is Visium data only, and the data which is available for download through the spatialLIBD package is also Visium-based.) Please let me know if there is any way I can access this data. Thank you!

serenolopezdarwin commented 2 years ago

The DLPFC sci-rna-seq data can be found in here:

https://github.com/LieberInstitute/10xPilot_snRNAseq-human