LieberInstitute / HumanPilot

Spatial Transcriptomics human DLPFC pilot study part of the spatialLIBD project
https://doi.org/10.1038/s41593-020-00787-0
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Error in `collect()`: ! Failed to collect lazy table. #9

Closed FAFUshiyan closed 3 months ago

FAFUshiyan commented 1 year ago

Dear spatialLIBD team, I have completed the installation of spatialLIBD, but when executing spe <- fetch_data(type = "spe"), an error occurred. The error message is as follows:

image

I would like to understand the cause of this error.

lcolladotor commented 11 months ago

See https://github.com/lmweber/WeberDivechaLCdata/issues/1#issuecomment-1834717960 and https://github.com/lmweber/WeberDivechaLCdata/issues/1#issuecomment-1834718947. In particular https://github.com/Bioconductor/BiocFileCache/pull/50#issuecomment-1781113054.

We would need to have your R session information output to help you further to check that the R package versions you are using are up to date.

Best, Leo

CSQxiaogongju commented 11 months ago

See lmweber/WeberDivechaLCdata#1 (comment) and lmweber/WeberDivechaLCdata#1 (comment). In particular Bioconductor/BiocFileCache#50 (comment).

We would need to have your R session information output to help you further to check that the R package versions you are using are up to date.

Best, Leo

Hi Leo: I meet the same problem. my R version is 4.3.1 and BiocManager is 1.30.22 Best, Siqi

CSQxiaogongju commented 11 months ago

See lmweber/WeberDivechaLCdata#1 (comment) and lmweber/WeberDivechaLCdata#1 (comment). In particular Bioconductor/BiocFileCache#50 (comment). We would need to have your R session information output to help you further to check that the R package versions you are using are up to date. Best, Leo

Hi Leo: I meet the same problem. my R version is 4.3.1 and BiocManager is 1.30.22 Best, Siqi

I success to solve the problem when I update the Bioconductor to 3.18