RNAscope QC by experiment/slide

LieberInstitute / Human_DLPFC_Deconvolution

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Closed lahuuki closed 11 months ago

lahuuki commented 2 years ago

Check number of nuclei, and number of nuclei/slide area. We are seeing fewer nuc (~60k per slide) than in TREG (~100k)
Check prop AKT3 positive nuc, in TREG = 0.948
maybe checkout algorithms metrics

lahuuki commented 11 months ago

No quality issues were linked to specific slides or locations, see #2