bug in the mouse code, step7, R counts

LieberInstitute / RNAseq-pipeline

Original version of the RNA-seq pipeline implemented in SPEAQeasy at https://github.com/LieberInstitute/SPEAQeasy.

http://research.libd.org/SPEAQeasy/

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Closed andrewejaffe closed 7 years ago

andrewejaffe commented 7 years ago

Line 226-227, there is an extra parentheses

geneMap$Symbol = sym$mgi_symbol[geneMap$ensemblID, sym$ensembl_gene_id)]
geneMap$EntrezID = sym$entrezgene[geneMap$ensemblID, sym$ensembl_gene_id)]

andrewejaffe commented 7 years ago

sorry, its missing a match( , not that there is an extra parentheses -a