maybe explore switching to `tximport` for Salmon stuff?

LieberInstitute / RNAseq-pipeline

Original version of the RNA-seq pipeline implemented in SPEAQeasy at https://github.com/LieberInstitute/SPEAQeasy.

http://research.libd.org/SPEAQeasy/

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Open andrewejaffe opened 7 years ago

andrewejaffe commented 7 years ago

https://bioconductor.org/packages/release/bioc/html/tximport.html not sure how much easier this would make anything but could be one less thing to support...