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LieberInstitute / RNAseq-pipeline

Original version of the RNA-seq pipeline implemented in SPEAQeasy at https://github.com/LieberInstitute/SPEAQeasy.
http://research.libd.org/SPEAQeasy/
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look into adding `MISO` as an additional step #52

Open andrewejaffe opened 7 years ago

andrewejaffe commented 7 years ago

to calculate "percent spliced in" http://miso.readthedocs.io/en/fastmiso/