SPEAQeasy: portable LIBD RNA-seq pipeline using Nextflow. Check http://research.libd.org/SPEAQeasy-example/ for an example on how to use this pipeline and analyze the resulting output files.
A longer-term goal would be to confirm SPEAQeasy runs smoothly on supported operating systems (Linux and Mac), with and without docker, using a GitHub Actions workflow. We might imagine a separate workflow would exist for installation vs. execution, and execution might use cached annotation files unless otherwise specified.
A longer-term goal would be to confirm SPEAQeasy runs smoothly on supported operating systems (Linux and Mac), with and without docker, using a GitHub Actions workflow. We might imagine a separate workflow would exist for installation vs. execution, and execution might use cached annotation files unless otherwise specified.