Extract FASTQs - Githubissues

LieberInstitute / Visium_SPG_AD

Visium SPG AD project (n = 10) using Visium Spatial Proteogenomics (Visium-SPG) on dissections from the inferior temporal cortex (ITC) from Alzheimer's disease cases and controls.

https://research.libd.org/Visium_SPG_AD

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Extract FASTQs #1

Closed lcolladotor closed 3 years ago

lcolladotor commented 3 years ago

Run bamtofastq on spaceranger files from 10x

with our and their fiducial alignments
for the targeted sequencing files

lcolladotor commented 3 years ago

Done, the files live at /dcs04/lieber/lcolladotor/with10x_LIBD001/Visium_IF_AD/raw-data/FASTQ/spaceranger_our_alignments_nocr11.