Visium SPG AD project (n = 10) using Visium Spatial Proteogenomics (Visium-SPG) on dissections from the inferior temporal cortex (ITC) from Alzheimer's disease cases and controls.
Number of sets: 3 + 2 + 1 (optional) + 2 (optional, likely skip) + 1 (optional, likely skip)
[x] Table S2: split by "Trait". There's 3 of them.
Direction available: Beta, but we won't use it since there can be an up and a down intron for the same gene.
Statistics available: FDR
[x] Table S3:
Direction available: None
Statistics available: Both FDR (P-value_Benjamini-Hochberg) and Bonferroni (P-value_BonferroniAdjusted) adjusted. Could subset each to < 0.05 (so 2 sets total).
Optional
[ ] Table S10: Also need to group introns by gene.
Number of sets: 3 + 2 + 1 (optional) + 2 (optional, likely skip) + 1 (optional, likely skip)
[x] Table S2: split by "Trait". There's 3 of them.
Beta
, but we won't use it since there can be an up and a down intron for the same gene.FDR
[x] Table S3:
P-value_Benjamini-Hochberg
) and Bonferroni (P-value_BonferroniAdjusted
) adjusted. Could subset each to < 0.05 (so 2 sets total).Optional
pval-adjusted
.