Mathys et al 2019

[lcolladotor]

• Number of sets: 6 cell types 4 models = 24 sets direction (2) = 48 sets

• Note: snRNA-seq

  • Direction available: IndModel.FC or MixedModel.z for the indicator model (Wilcoxon test) or for the mixed effects model (Poisson)
  • Statistics available: Yes, but they also took into account effect size with DEGs.Ind.Model and DEGs.Ind.Mix.models

• [x] Ignore direction: 6 cell types * 4 models = 24 sets

• [ ] Use direction: 6 cell types 4 models 2 directions = 48 sets

• [ ] For each of the above, check how many genes we have in each set. They might be too small.

Note that Excel might introduce some issues in this table too.

[lcolladotor]

Sang Ho could practice data wrangling a bit here.