Closed lcolladotor closed 6 years ago
I incorrectly assumed that it was run on a strand-specific protocol. It's re-running without that option right now.
Sample 72 (SRR1476407) failed on the hisat2 step, so I'm re-running it (and all the steps downstream of it).
Sample 7 (SRR1334440) failed on the feature counts step, which lead step 7 to fail. Should be done later today.
Process FASTQ files and add the recount GTEx metadata to the RSE objects