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LieberInstitute / brainseq_phase2

BrainSeq Phase II project lead by LIBD for the BrainSeq Consortium
http://eqtl.brainseq.org/
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Check DLPFC and HIPPO correlation #29

Closed lcolladotor closed 6 years ago

lcolladotor commented 6 years ago

Using our data, check the correlation among the DLPFC and HIPPO gene expression.

lcolladotor commented 6 years ago

• /dcl01/lieber/ajaffe/lab/brainseq_phase2/correlation/pdf/corr_vs_tstat_fwer.pdf has the correlation (from expr or cleaned data) vs the SCZD t-stats (HIPPO, DLPFC, BSP1, CMC) with red meaning that the corr has an FWER<5% • /dcl01/lieber/ajaffe/lab/brainseq_phase2/correlation/pdf/corrpvals_vs_sczd_fwer.pdf is similar to the above, but it compares correlation FWER vs SCZD FDR • /dcl01/lieber/ajaffe/lab/brainseq_phase2/correlation/pdf/go_corr_genes.pdf shows the GO enrichment results for both expr and cleaned corr genes with FWER <5% • The R script that made all this includes some log info too https://github.com/LieberInstitute/brainseq_phase2/blob/master/correlation/corr_analysis.R