Closed lcolladotor closed 6 years ago
• /dcl01/lieber/ajaffe/lab/brainseq_phase2/correlation/pdf/corr_vs_tstat_fwer.pdf
has the correlation (from expr or cleaned data) vs the SCZD t-stats (HIPPO, DLPFC, BSP1, CMC) with red meaning that the corr has an FWER<5%
• /dcl01/lieber/ajaffe/lab/brainseq_phase2/correlation/pdf/corrpvals_vs_sczd_fwer.pdf
is similar to the above, but it compares correlation FWER vs SCZD FDR
• /dcl01/lieber/ajaffe/lab/brainseq_phase2/correlation/pdf/go_corr_genes.pdf
shows the GO enrichment results for both expr and cleaned corr genes with FWER <5%
• The R script that made all this includes some log info too https://github.com/LieberInstitute/brainseq_phase2/blob/master/correlation/corr_analysis.R
Using our data, check the correlation among the DLPFC and HIPPO gene expression.