run tensorQTL map_nominal using log2(rpkm+1) on all features

LieberInstitute / goesHyde_mdd_rnaseq

Fernando Goes and Thomas Hyde MDD RNA-seq project

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run tensorQTL map_nominal using log2(rpkm+1) on all features #20

Open gpertea opened 1 year ago

gpertea commented 1 year ago

For matrixQTL in the past we used log2(rpkm+1) so it would be good to re-run tensorQTL with the same transformed values (log2(tpm+1) for transcripts), instead of using raw counts.