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LieberInstitute / spatialDLPFC

spatialDLPFC project involving Visium (n = 30), Visium SPG (n = 4) and snRNA-seq (n = 19) samples
http://research.libd.org/spatialDLPFC/
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MAGMA clinical enrichment analysis #101

Closed lcolladotor closed 1 year ago

lcolladotor commented 2 years ago

We discussed it on Thursday last week. TBD whether we'll actually do it @kmaynard12 @mattntran

lcolladotor commented 2 years ago

Related to https://github.com/LieberInstitute/Visium_IF_AD/issues/38

lcolladotor commented 2 years ago

Lets discuss with @kmaynard12 whether we want to do it with the BayesSpace cluster marker genes (pseudo-layers) or the snRNA-seq cell type marker genes. We also need to choose the GWASes we'll use.

Aka, need more info before continuing with this one.

lcolladotor commented 1 year ago

We won't be doing this.