[x] number of enriched genes in each cluster next to a representative section colored the same, how many enriched genes in each cluster for k = 9 and k = 16, make heat maps? make it a bar graph instead of scatter plot.
[x] make marker gene plots for CLDN5 (and other biologically interesting genes from google sheet). Highlight gene that marks meninges layer (pick one that looks most convincing).
[x] spot plot next to modeling results box plot for that gene. Use favorite tissue section for spot plot. k = 9
look at top pairwise comparison gene between layer 2 and layer 3 (C1QL2 enriched gene in layer 2 manual annotations)
-panel A will be two genes for k = 9, panel B will be a gene that marks the two different layer 1 clusters that appear at k = 16 (apoE, msx1 for layer closer to meningens, sparc).
[x] number of enriched genes in each cluster next to a representative section colored the same, how many enriched genes in each cluster for k = 9 and k = 16, make heat maps? make it a bar graph instead of scatter plot.
[x] make marker gene plots for CLDN5 (and other biologically interesting genes from google sheet). Highlight gene that marks meninges layer (pick one that looks most convincing).
[x] spot plot next to modeling results box plot for that gene. Use favorite tissue section for spot plot. k = 9
look at top pairwise comparison gene between layer 2 and layer 3 (C1QL2 enriched gene in layer 2 manual annotations) -panel A will be two genes for k = 9, panel B will be a gene that marks the two different layer 1 clusters that appear at k = 16 (apoE, msx1 for layer closer to meningens, sparc).