Closed boyiguo1 closed 1 year ago
To my best understanding, between Tangram
and cell2location
, only Tangram
provides single-cell resolution Visium data, via "Spatially resolved xxx patterns"
Scripts to prep Visium CCC data: 27f4ae7
Under Boyi's drive ~/CCC_Visium/
, creates each folder for each sample. Within each sample folder, a sample specific spe object is created.
De-prioritize this analysis
Tangram
orcell2location
SpaTalk
RequirementSpaTalk
with each sample using the K=13 layer specific cell typeSpaTalk
(also included below) except that cortex layers are highlighted in the spot plot.