Closed Weiqin-Zhao closed 3 weeks ago
Hello,
The images have a different naming convention than the Br*
sample IDs, but all 30 images should be present under /raw-data/Images
. The /raw-data/sample_info/Visium_dlpfc_mastersheet.xlsx
Excel sheet has a image file path
column that maps the expected sample IDs to their location on Globus, if you omit the beginning of each path up until spatialDLPFC
. Please let me know if you're able to find everything given that information.
Best, -Nick
Thanks a lot! I have found the xlsx file!
Dear Author,
Thank you for your excellent work!
May I know where I can access the histology images(*.tif) of the Visium(n=30) data?
In the adata_vis_orig.h5ad, the sample id of the Visium(n=30) data are: {'Br2720_ant', 'Br2720_mid', 'Br2720_post', 'Br2743_ant', 'Br2743_mid', 'Br2743_post', 'Br3942_ant', 'Br3942_mid', 'Br3942_post', 'Br6423_ant', 'Br6423_mid', 'Br6423_post', 'Br6432_ant', 'Br6432_mid', 'Br6432_post', 'Br6471_ant', 'Br6471_mid', 'Br6471_post', 'Br6522_ant', 'Br6522_mid', 'Br6522_post', 'Br8325_ant', 'Br8325_mid', 'Br8325_post', 'Br8492_ant', 'Br8492_mid', 'Br8492_post', 'Br8667_ant', 'Br8667_mid', 'Br8667_post'}
However, in the "/raw-data/Images/folder" in the globus link, I can only find Br2720 and Br6432. I would be greatly appreciate if you could provide more assistance.