Where can I get the full size H&E images?

LieberInstitute / spatialDLPFC

spatialDLPFC project involving Visium (n = 30), Visium SPG (n = 4) and snRNA-seq (n = 19) samples

http://research.libd.org/spatialDLPFC/

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Where can I get the full size H&E images? #146

Open amssljc opened 3 months ago

amssljc commented 3 months ago

Could you please give me a link to download 30 full size images or at least high resolution? Thanks a lot! I cant connect to globus.

lcolladotor commented 3 months ago

Hi,

They are only available via Globus.

Best, Leonardo

lcolladotor commented 3 months ago

Just to expand a bit, our data is hosted at JHPCE https://jhpce.jhu.edu/, which is down this week as noted at https://jhpce.jhu.edu/JHPCE-maintenance-july-2024/. So Globus will not work for a week or so, until JHPCE is back online again.

Best, Leonardo

amssljc commented 3 months ago

@lcolladotor Thanks for the quick reply, I thought it was my internet, I'll try again after 7.22, thanks again!!!

Yingxinzz commented 1 month ago

Where can I get sce_DLPFC.Rdata?

lcolladotor commented 1 month ago

@Yingxinzz your question should have been a new issue as it's not related to H&E images.

It seems like you are interested in the SingleCellExperiment object for the snRNA-seq data from this project. If so, check the examples at https://research.libd.org/spatialLIBD/reference/fetch_data.html to see how you can download it with spatialLIBD::fetch_data("spatialDLPFC_snRNAseq").

Best, Leonardo