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LieberInstitute / spatialDLPFC

spatialDLPFC project involving Visium (n = 30), Visium SPG (n = 4) and snRNA-seq (n = 19) samples
http://research.libd.org/spatialDLPFC/
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Compute ARI against BayesSpace #44

Closed lcolladotor closed 2 years ago

lcolladotor commented 2 years ago

Once #31 #41 #42 are all done, compute ARIs against BayesSpace in preparation for Figure 2.

lcolladotor commented 2 years ago

We are guessing here that BayesSpace will be the better one from #46 using our published data. Then here, to avoid manually annotating, we can then compare the semi-supervised, graph based clustering on HARMONY, SpaGCN, etc against BayesSpace.