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LieberInstitute / spatialDLPFC

spatialDLPFC project involving Visium (n = 30), Visium SPG (n = 4) and snRNA-seq (n = 19) samples
http://research.libd.org/spatialDLPFC/
19 stars 3 forks source link

silhouette for evaluating bayesSpace cluster #55

Closed abspangler13 closed 2 years ago

abspangler13 commented 2 years ago

http://bioconductor.org/books/3.14/OSCA.advanced/clustering-redux.html

instructions from Stephanie in the spatial_dlfpc slack channel: https://jhu-genomics.slack.com/archives/C01EA7VDJNT/p1643659652511459?thread_ts=1643643497.012099&cid=C01EA7VDJNT

Decided to use fasthplust https://github.com/ntdyjack/fasthplus#using-fasthplus