sfigur_ari_pilot - Githubissues

LieberInstitute / spatialDLPFC

spatialDLPFC project involving Visium (n = 30), Visium SPG (n = 4) and snRNA-seq (n = 19) samples

http://research.libd.org/spatialDLPFC/

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sfigur_ari_pilot #71

Closed lcolladotor closed 2 years ago

lcolladotor commented 2 years ago

spell out ARI (adjusted Rand Index)
Turn off outliers (outlier = NA).
Try using + theme_bw(base_size = 30) or 20 to increase the text size
Increase the point size

Optional

You could also use ggpubr::ggboxplot() https://rpkgs.datanovia.com/ggpubr/reference/ggboxplot.html
See https://github.com/LieberInstitute/Visium_IF_AD/blob/master/plots/03_analysis/10x_checks/alignment_check_abby_vs_10x.pdf as an example which was made using ggpubr::ggpaired() https://github.com/LieberInstitute/Visium_IF_AD/blob/fc6f63d1841fea819772a8bfc7b240d8a5f0198a/code/03_analysis/02_sample_metrics.R#L103-L112
could use colors to highlight differences in these methods or inputs