Create Globus endpoint - Githubissues

LieberInstitute / spatialDLPFC

spatialDLPFC project involving Visium (n = 30), Visium SPG (n = 4) and snRNA-seq (n = 19) samples

http://research.libd.org/spatialDLPFC/

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Create Globus endpoint #83

Closed lcolladotor closed 2 years ago

lcolladotor commented 2 years ago

To share all the raw data, we'll need a Globus endpoint. @lahuuki can advise you on this process.

We'll need to add it to the docs #75 and also update http://research.libd.org/globus/. I think that's why it'll also make sense to move the snRNA-seq data to this repo so a single Globus endpoint will point to all this data.

We'll need to check if the softlinks for the raw-data dir actually work through Globus or not.

stephaniehicks commented 2 years ago

Hi @lahuuki! I'm following up on this thread to see if you can help make a globus endpoint. I've talked with @lcolladotor and we are interested in sharing all the samples with student I'm working with at Hopkins. Could you help us with this? It should include both the spaceranger output, but also the .tiff files. I am happy to assist in any way you need too. Just let me know what I can do. Thank you!

lcolladotor commented 2 years ago

Use http://research.libd.org/globus/jhpce_spatialDLPFC/index.html which I just made to close this issue.

lcolladotor commented 2 years ago

From that, it seems like the soft links are indeed working.