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LieberInstitute / spatialDLPFC

spatialDLPFC project involving Visium (n = 30), Visium SPG (n = 4) and snRNA-seq (n = 19) samples
http://research.libd.org/spatialDLPFC/
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Relocate snRNA-seq files to this repo #86

Closed lcolladotor closed 2 years ago

lcolladotor commented 2 years ago

This likely can be done with mv commands or directly from Cyberduck by Louise because both are already at /dcs04/lieber/lcolladotor. We'll need to check first that the ACLs are the same in both (qrsh + nfs4_getfacl for each main dir). If they aren't, we'll use rsync then.

We could save the commands we use to relocate files at code/_jhpce_org in case we need to revisit later how we moved things.

lcolladotor commented 2 years ago

Louise will likely need to update some bash scripts or here::here() calls after relocating the files to this repo.

lcolladotor commented 2 years ago 
$ nfs4_getfacl /dcs04/lieber/lcolladotor/spatialDLPFC_LIBD4035/spatialDLPFC

# file: /dcs04/lieber/lcolladotor/spatialDLPFC_LIBD4035/spatialDLPFC
A::OWNER@:rwaDxtTcCy
A::GROUP@:rwaDxtcy
A:g:lieber_lcolladotor@cm.cluster:rwaDxtcy
A:g:lieber_marmaypag@cm.cluster:rwaDxtcy
A:g:hickslab@cm.cluster:rwaDxtcy
A::EVERYONE@:tcy
A:fdi:OWNER@:rwaDxtTcCy
A:fdi:GROUP@:rwaDxtcy
A:fdig:lieber_lcolladotor@cm.cluster:rwaDxtcy
A:fdig:lieber_marmaypag@cm.cluster:rwaDxtcy
A:fdig:hickslab@cm.cluster:rwaDxtcy
A:fdi:EVERYONE@:tcy
$ nfs4_getfacl /dcs04/lieber/lcolladotor/deconvolution_LIBD4030/DLPFC_snRNAseq/

# file: /dcs04/lieber/lcolladotor/deconvolution_LIBD4030/DLPFC_snRNAseq/
A::OWNER@:rwaDxtTcCy
A::GROUP@:rwaDxtcy
A:g:lieber_lcolladotor@cm.cluster:rwaDxtcy
A:g:lieber_marmaypag@cm.cluster:rwaDxtcy
A:g:hickslab@cm.cluster:rwaDxtcy
A::EVERYONE@:tcy
A:fdi:OWNER@:rwaDxtTcCy
A:fdi:GROUP@:rwaDxtcy
A:fdig:lieber_lcolladotor@cm.cluster:rwaDxtcy
A:fdig:lieber_marmaypag@cm.cluster:rwaDxtcy
A:fdig:hickslab@cm.cluster:rwaDxtcy
A:fdi:EVERYONE@:tcy
$ nfs4_getfacl /dcs04/lieber/lcolladotor/deconvolution_LIBD4030/DLPFC_Visium_IF/

# file: /dcs04/lieber/lcolladotor/deconvolution_LIBD4030/DLPFC_Visium_IF/
A::OWNER@:rwaDxtTcCy
A::GROUP@:rwaDxtcy
A:g:lieber_lcolladotor@cm.cluster:rwaDxtcy
A:g:lieber_marmaypag@cm.cluster:rwaDxtcy
A:g:hickslab@cm.cluster:rwaDxtcy
A::EVERYONE@:tcy
A:fdi:OWNER@:rwaDxtTcCy
A:fdi:GROUP@:rwaDxtcy
A:fdig:lieber_lcolladotor@cm.cluster:rwaDxtcy
A:fdig:lieber_marmaypag@cm.cluster:rwaDxtcy
A:fdig:hickslab@cm.cluster:rwaDxtcy
A:fdi:EVERYONE@:tcy

They look the same, so mv should work. Similar to https://github.com/LieberInstitute/spatialDLPFC/issues/87#issuecomment-1120460212

lcolladotor commented 2 years ago

Remember to document the mv code at code/_jhpce_org, thanks!

lcolladotor commented 2 years ago

We'll publish the 2 repos (https://github.com/LieberInstitute/DLPFC_snRNAseq) instead.