Spot deconvolution: cell2location option

LieberInstitute / spatialDLPFC

spatialDLPFC project involving Visium (n = 30), Visium SPG (n = 4) and snRNA-seq (n = 19) samples

http://research.libd.org/spatialDLPFC/

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Spot deconvolution: cell2location option #97

Closed lcolladotor closed 1 year ago

lcolladotor commented 2 years ago

Similar to #89 but with cell2location

Nick-Eagles commented 2 years ago

Update: most of the code is in place for running cell2location, and I'm just beginning to apply it after obtaining access to the recent snRNA-seq data.