Wrong SpatialExperiment version loaded from pkgload

[Yifath7]

When trying to run app.R, I get the following warnings which do not allow me proceed: Need SpatialExperiment >= 1.1.5 but loaded version is 1.0.0 2: object ‘imgData<-’ is not exported by 'namespace:SpatialExperiment' 3: object ‘spatialCoordsNames<-’ is not exported by 'namespace:SpatialExperiment' 4: object ‘spatialData<-’ is not exported by 'namespace:SpatialExperiment' 5: object ‘SpatialImage’ is not exported by 'namespace:SpatialExperiment' 6: object ‘imgData’ is not exported by 'namespace:SpatialExperiment' 7: object ‘spatialData’ is not exported by 'namespace:SpatialExperiment'

Thanks in advance.

[lcolladotor]

Hi,

Please post your R session information.

library("sessioninfo")
options(width = 120)
session_info()

You most likely are using a combination of Bioconductor 3.13 (current devel) and 3.12 (current release) packages. The GitHub version of spatialLIBD is meant to be used with Bioconductor 3.13. https://github.com/LieberInstitute/spatialLIBD/tree/RELEASE_3_12 is 3.12 compatible though.

Best, Leo

[Yifath7]

Hi,

Please post your R session information.

library("sessioninfo")
options(width = 120)
session_info()

You most likely are using a combination of Bioconductor 3.13 (current devel) and 3.12 (current release) packages. The GitHub version of spatialLIBD is meant to be used with Bioconductor 3.13. https://github.com/LieberInstitute/spatialLIBD/tree/RELEASE_3_12 is 3.12 compatible though.

Best, Leo

Worked! Thank you :)

Best, Yifat

[lcolladotor]

ok =)