search

LieberInstitute / spatialLIBD

Code for the spatialLIBD R/Bioconductor package and shiny app
http://LieberInstitute.github.io/spatialLIBD/
78 stars 16 forks source link

[Feature Request] Host Visium LS data through `fetch_data()` #81

Closed Nick-Eagles closed 2 months ago

Nick-Eagles commented 2 months ago

The JHPCE paths to the files to host are:

/dcs05/lieber/lcolladotor/visiumStitched_LIBD1070/LS_visiumStitched/processed-data/04_example_data/Visium_LS_spaceranger.zip
/dcs05/lieber/lcolladotor/visiumStitched_LIBD1070/LS_visiumStitched/processed-data/04_example_data/Visium_LS_imagej_out.zip
/dcs05/lieber/lcolladotor/visiumStitched_LIBD1070/LS_visiumStitched/processed-data/04_example_data/Visium_LS_spe.rds

So far, I've added this script to generate the metadata CSV (created here) on the stitched_plotting branch. I haven't made the necessary changes related to fetch_data() itself.

Thanks!