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Ligo-Biosciences / AlphaFold3

Open source implementation of AlphaFold3
Apache License 2.0
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AlphaFold3 Server #52

Open locitran opened 2 weeks ago

locitran commented 2 weeks ago

Hi folks, Hope this is a right place to ask. Alphafold server allows user input protein sequence up to 5,000 tokens. My system is a bit larger than this number, 7,207 residues. Is there any way to use the server to make predictions?

Thanks

maxall41 commented 1 week ago

You could try trimming your complex. Other than that maybe try Chai-1 on an H200 or something... https://github.com/chaidiscovery/chai-lab

locitran commented 1 week ago

@maxall41 Chai-1 also limits the total length as 2048

maxall41 commented 1 week ago

Hmm, then you might just have to trim your complex.