Make fixSpecies() handle typical NCBI organism names

[LimaRAF]

Names in NCBI/GenBank commonly have a particularly notation that fixSpecies() currently does not handle well. Improvements are needed. Examples are:

• "Syzygium sp. DIR045"
• "Malaxis sp. TBG132709"
• "Senecio lautus x Senecio repangae subsp. pokohinuensis"
• "Arabidopsis thaliana x Arabidopsis arenosa"
• "Juglans microcarpa x Juglans regia"
• "Acacia aff. deltoidea x Acacia aff. stigmatophylla R5710"
• "Metrosideros excelsa x Metrosideros kermadecensis"
• "Metrosideros excelsa x Metrosideros robusta"
• "Tetrastigma cf. magnum PBP-2017"
• "Phyllanthus aff. sootepensis RWB059"
• "Phyllanthus cf. gomphocarpus Yu 250"
• "Phyllanthus cf. boehmii Friis 13159"
• "Acacia aff. shirleyi Carroll s.n."
• "Acacia aff. cowleana Carroll 18"
• "Acacia aff. gracillima Barett 2931"
• "Phyllanthus sp. RWB-2020a"
• "Asarum sp. DT2604"
• "Phyllanthus aff. vakinankaratrae Ravelonarivo 4264"
• "Tragia sp. Philippines"
• "Tragia sp. Merida"

E também:

• "Syzygium spp."
• "Paralychnophora harleyi (H.Rob.) D.J.N.Hind"
• "Anemopaegma arvense (Vell.) Stellfeld ex de Souza"
• "Maytenus boaria Molina"
• "Sloanea fasciculata D. Sampaio & V.C. Souza"
• "Conchocarpus albiflorus (Bruniera & Groppo) Bruniera & Groppo"
• "Grabowskia boerhaaviifolia (L. f.) Schltdl."

[LimaRAF]

There were improvements with the new version of ´fixSpecies()´ in version 0.1.8. but there is still work to do (those not checked below. Some cases, codes and hybrids go into author names and for case 3 there actually an error!

• [x] "Syzygium sp. DIR045"
• [x] "Malaxis sp. TBG132709"
• [ ] "Senecio lautus x Senecio repangae subsp. pokohinuensis"
• [ ] "Arabidopsis thaliana x Arabidopsis arenosa"
• [ ] "Juglans microcarpa x Juglans regia"
• [ ] "Acacia aff. deltoidea x Acacia aff. stigmatophylla R5710"
• [ ] "Metrosideros excelsa x Metrosideros kermadecensis"
• [ ] "Metrosideros excelsa x Metrosideros robusta"
• [ ] "Tetrastigma cf. magnum PBP-2017"
• [ ] "Phyllanthus aff. sootepensis RWB059"
• [ ] "Phyllanthus cf. gomphocarpus Yu 250"
• [ ] "Phyllanthus cf. boehmii Friis 13159"
• [ ] "Acacia aff. shirleyi Carroll s.n."
• [ ] "Acacia aff. cowleana Carroll 18"
• [ ] "Acacia aff. gracillima Barett 2931"
• [x] "Phyllanthus sp. RWB-2020a"
• [x] "Asarum sp. DT2604"
• [ ] "Phyllanthus aff. vakinankaratrae Ravelonarivo 4264"
• [x] "Tragia sp. Philippines"
• [x] "Tragia sp. Merida"
• [x] "Syzygium spp."
• [x] "Paralychnophora harleyi (H.Rob.) D.J.N.Hind"
• [x] "Anemopaegma arvense (Vell.) Stellfeld ex de Souza"
• [x] "Maytenus boaria Molina"
• [x] "Sloanea fasciculata D. Sampaio & V.C. Souza"
• [x] "Conchocarpus albiflorus (Bruniera & Groppo) Bruniera & Groppo"
• [x] "Grabowskia boerhaaviifolia (L. f.) Schltdl."