agduncan94
commented
4 years ago Sample tracks.conf [tracks.isoformExpressionQuantification] storeClass=gdc-viewer/Store/SeqFeature/IsoformExpressionQuantification type=JBrowse/View/Track/HTMLFeatures key=GDC Isoform Expression Quantification urlTemplate=https://api.gdc.cancer.gov/data/63c218de-39e4-4d51-9970-cd2d930865f9
Overview Data Format - TXT/TSV Data Category - Transcriptome Profiling Data Type - Isoform Expression Quantification Example File IDs - 63c218de-39e4-4d51-9970-cd2d930865f9, 551770de-55eb-43cf-9dac-6455bdae1b53
Notes Add a SeqFeature for Isoform Expression Quantification Track. Similar to BED, so can use common base class BaseBEDLikeFeature.js.
Investigate the best way to display tracks (XYPlot vs HTMLFeature).
File Header miRNA_ID isoform_coords read_count reads_per_million_miRNA_mapped cross-mapped miRNA_region