add SeqFeature store class for Gene Level Copy Number Track

LincolnSteinLab / gdc-viewer

A JBrowse plugin for viewing GDC Data

https://lincolnsteinlab.github.io/gdc-viewer/

MIT License

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add SeqFeature store class for Gene Level Copy Number Track #78

Closed GFJHogue closed 4 years ago

GFJHogue commented 4 years ago

Main issue: #63

Looked into best way to display track and each of XYPlot & HTMLFeatures have their advantages.

I'd say using both types together would be ideal to both see the copy numbers at a high-level (XYPlot) and be able to click in to see more gene info (HTMLFeatures).

agduncan94 commented 4 years ago

For future reference, an example config is shown below.

[tracks.genelvlcpynum]
urlTemplate=https://api.gdc.cancer.gov/data/b8b369b0-1e63-485c-a711-0211823834fe
storeClass=gdc-viewer/Store/SeqFeature/GeneLevelCopyNumber
type=JBrowse/View/Track/HTMLFeatures