LincolnSteinLab / gdc-viewer

A JBrowse plugin for viewing GDC Data
https://lincolnsteinlab.github.io/gdc-viewer/
MIT License
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Add UI flow for BAM slicing #96

Open agduncan94 opened 3 years ago

agduncan94 commented 3 years ago

This will look similar to the by file id/name UI, however, it will only be for BAM files. The user would search for a BAM file, and then give a range of where they want to splice. The UI would then generate and display the commands needed to be run by the user to get this working.

See https://docs.gdc.cancer.gov/API/Users_Guide/BAM_Slicing/#query-parameters to see how BAM slicing regions are specified.