Please create a git tag for versioning.

LinearFold / LinearPartition

Linear-Time Approximation of RNA Folding Partition Function and Base Pairing Probabilities

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Please create a git tag for versioning. #1

Closed PertuyF closed 3 years ago

PertuyF commented 3 years ago

Dear @VincentZhangOR @LinearFold,

Thank you very much for the effort you put into developing LinearPartition. As proposed for LinearFold, I am willing to create a conda package for LinearPartition on Bioconda, that would facilitate distribution. The requirement for this is that you adopt some versioning strategy using a github release or a git tag. Could you please do so?

Best, Fabien

LinearFold commented 3 years ago

Hello Fabien,

We've released a version with tag "LinearPartition version 1.0". Thanks again for your interest.

Best, LinearFold Group

PertuyF commented 3 years ago

@LinearFold thank you very much! My PR to Bioconda were merged, linearpartition and linearfold should soon be available as conda packages and biocontainers (docker images).

Please note that I was not able to include some graphical tools (draw_circular and draw_bpp_plot) as the current python wrappers do not allow to relocate the executables through symbolic links. I currently don't have bandwidth to submit PR, buy we can discuss how to fix this if you want.

Best, Fabien