LinguaPhylo linguaPhylo issues

LinguaPhylo / linguaPhylo

LinguaPhylo: A language for describing, visualising and simulating probabilistic phylogenetic models

GNU Lesser General Public License v3.0

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issues

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Improve GuessType in ReadDelim

#476 walterxie closed 1 hour ago
1
Implement SubstituteClade Function

#475 EvaLiyt opened 1 day ago
0
Add ProgressBar

#474 walterxie opened 2 days ago
0
Make sure sample() method is only called by 3 scenarios:

#473 walterxie opened 2 days ago
1
Implement SampleBranch Distribution

#472 EvaLiyt opened 3 days ago
0
Change Exponential growth function name

#471 kche309 opened 4 days ago
1
Add a New Object TimeTreeBranch

#470 EvaLiyt opened 4 days ago
0
Trees from 'readTrees' Cannot Apply in PhyloCTMC

#469 EvaLiyt opened 1 week ago
0
Sample method called twice

#468 yxu927 opened 1 week ago
3
LPhystudio viewing large alignments causes window to lag

#467 kche309 opened 1 week ago
1
Add memory efficient version of ErrorAlignment

#466 kche309 opened 1 week ago
0
Writing large alignment causes out of memory error

#465 EvaLiyt opened 1 week ago
0
LPhy argument matching does not handle the array of objects

#464 walterxie closed 2 weeks ago
0
Implement Multinomial distribution

#463 kche309 opened 4 weeks ago
0
merge PopulationFunctionCoalescent to SerialCoalescent

#462 walterxie opened 4 weeks ago
0
Implement LocalClock for FLC

#461 EvaLiyt opened 4 weeks ago
0
Unit test getOldestNode()

#460 walterxie closed 4 weeks ago
4
IntelliJ error when opening linguaPhylo project

#459 kche309 opened 1 month ago
0
Implement coalescent population functions gompertz, logistic and exponential

#458 yxu927 opened 1 month ago
1
add SubsampledTree class, Difference class, and methods for TimeTree / TimeTreeNode

#457 EvaLiyt closed 1 month ago
0
Long numbers should be displayed using scientific notation

#456 kche309 opened 1 month ago
1
It should have a default ValueFormatter instead of throwing Exception

#455 walterxie closed 1 month ago
0
Simplify the SPI framework in lphy

#454 walterxie opened 1 month ago
1
Make Viewer extendable

#453 walterxie closed 1 month ago
2
ValueCreator cannot handle List

#452 walterxie closed 1 month ago
3
Serial coalescent constrain

#451 walterxie opened 2 months ago
0
Implement Ascertainment Corrections

#450 SimonGreenhill opened 2 months ago
2
Generic the Table column

#449 walterxie closed 2 months ago
1
The static method to import an alignment in a fasta format from reader

#448 walterxie closed 2 months ago
0
Parser bug to handle the vector containing variables

#447 walterxie closed 1 month ago
1
Create new lphy extension to use beast2 nexus parser

#446 walterxie opened 3 months ago
1
ReadFasta needs to guess sequence types

#445 walterxie closed 1 month ago
0
Data clamp needs to check if both sequence types are same

#444 walterxie opened 3 months ago
1
simulate method should not log

#443 walterxie closed 3 months ago
0
OutputSystem bug to handle the output dir

#442 walterxie closed 3 months ago
1
IID RuntimeException for Expected VectorizedRandomVariable after data clamping

#441 walterxie closed 3 months ago
0
new interface TextFileFormatted and improve SPI

#440 walterxie closed 3 months ago
0
Merge pull request #436 from LinguaPhylo/loader

#439 walterxie closed 3 months ago
1
Add SLPhy command argument to specify which random var(s) not logged

#438 walterxie closed 3 months ago
0
new interface for writing values to a file

#437 walterxie closed 3 months ago
1
Improve SPI

#436 walterxie closed 5 months ago
1
Recover unit test after significant change in SPI

#435 walterxie closed 5 months ago
1
GUI is stuck with large alignment

#434 walterxie opened 5 months ago
0
The design of FileConfig and SimulatorListener needs to change

#433 walterxie opened 5 months ago
0
OutputSystem bug FileNotFoundException

#432 walterxie closed 5 months ago
0
LPhyValueFormatter SPI not working in LPhyBEAST

#431 walterxie closed 5 months ago
1
move CanonicalCodeBuilder to the core

#430 walterxie closed 5 months ago
0
Improve the simulator code

#429 walterxie closed 5 months ago
0
The module not loading properly in the Gradle tests after splitting core and base

#428 walterxie closed 5 months ago
1
Exception when loading example jcCoal.lphy

#427 walterxie closed 5 months ago
0