search

LinkageIO / Camoco

Camoco is a fully-fledged software package for building co-expression networks and analyzing the overlap interactions among genes.
MIT License
41 stars 32 forks source link

Installation #101

Open Sofi-tofi opened 2 years ago

Sofi-tofi commented 2 years ago

Dear Rob,

I am having problems with the installation of Camoco. I use the following command:

$ pip install numpy $ git clone https://github.com/LinkageIO/Camoco.git $ cd Camoco $ python setup.py install

but I get this error:

$ error: pandas 0.23.4 is installed but pandas>=0.25 is required by {'statsmodels'}

I checked my pandas version with pip list, and I get pandas 1.4.0. So I don't understand why I can not install it.

I didn't could installed with pip camoco neither, please can you help me with this?

(I am using xubuntu 20, with python 3.8.10)

Thanks

Sofia

comcon1 commented 2 years ago

After spending some time I have successfully built camoco in a separate conda environment. It was not trivial. Please see my gist: https://gist.github.com/comcon1/b31cc95dd125b14aa2f58dc4c406c723