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LinkageIO / Camoco

Camoco is a fully-fledged software package for building co-expression networks and analyzing the overlap interactions among genes.
MIT License
41 stars 32 forks source link

Allow option for presence absence variation #57

Closed MeeshCompBio closed 7 years ago

MeeshCompBio commented 7 years ago

I wanted to allow Camoco to keep genes that are not expressed in some tissues but are in others (default is false). Right now zero values get set to NaN's and increase the chance of genes being filtered due to missing data. We still have minimum single sample expression to keep this modification in check if all the genes are not expressed.

MeeshCompBio commented 7 years ago

Just FYI, I ran pytest on my machine and all 60 checks passed.

schae234 commented 7 years ago

Sometimes there are finickey things in the test code that are based on randomness ... which makes them hard to track down.