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LinkageIO / Camoco

Camoco is a fully-fledged software package for building co-expression networks and analyzing the overlap interactions among genes.
MIT License
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Camoco Installation Issue #89

Closed yenon118 closed 5 years ago

yenon118 commented 5 years ago

Hello,

I have trouble installing Camoco. I think the error is caused by the sqlite3, but I am not sure how to solve it. Could anybody help? camoco error 1 camoco error 2

schae234 commented 5 years ago

Hi @yenon118

Thanks for the feedback. Looks like you are installing this on a windows system? We developed and tested the system for linux, so I have no idea if it would all run and go on Windows. It would be great to support windows users in the future, but Camoco has a lot of dependencies which aren't necessarily windows friendly. I suspect this included the library we are using to access sqlite3 (apsw).

Would it be possible to get access a computer running linux?

yenon118 commented 5 years ago

Hi,

Thank you for your help. I have successfully installed Camoco, but when I try to run Camoco, I received this error in both of my Linux machines which have Python3.6 and Python3.7. Do you know what causes this error?

aa

schae234 commented 5 years ago

Hi,

Sorry! This is a recent error because of a new version of pandas. I will update the install file to require the right version tomorrow morning, but until then you can fix the error by installing a version of pandas <= 0.23

This is mentioned in issue #88

Sorry about that!

On Wed, Feb 6, 2019, 6:00 PM Yen On Chan notifications@github.com wrote:

Hi,

Thank you for your help. I have successfully installed Camoco, but when I try to run Camoco, I received this error in both of my Linux machines which have Python3.6 and Python3.7. Do you know what causes this error?

[image: aa] https://user-images.githubusercontent.com/22091525/52381808-876b4480-2a38-11e9-8335-8c6d5655a729.JPG

— You are receiving this because you commented.

Reply to this email directly, view it on GitHub https://github.com/LinkageIO/Camoco/issues/89#issuecomment-461237062, or mute the thread https://github.com/notifications/unsubscribe-auth/ACcpv6gxIVqK-EfBKVUu6ygQ-iD1180pks5vK2yHgaJpZM4aj4lz .

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schae234 commented 5 years ago

Hi @yenon118

I've updated the dependencies, camoco should be able to be installed using pip:

pip install camoco

This will install version 0.6.2. Please let me know if this resolves your problem.

Rob

yenon118 commented 5 years ago

Thank you so much for your help. :smile::thumbsup: