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LinkageIO / Camoco

Camoco is a fully-fledged software package for building co-expression networks and analyzing the overlap interactions among genes.
MIT License
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fix fstring on value error output #94

Closed rroutsong closed 5 years ago

rroutsong commented 5 years ago

I was just running with some phytozome data that I had to match up to the ensemble format and putting my min. expression threshold to 0.0 caused all these rank tie errors and I saw that variable error. Kinda new to co-expression analysis, but it seemed to work with camoco v0.6.2 from pip build with quartiles on for my Poplar dataset.

schae234 commented 5 years ago

Yeah, we felt that the quantile normalization being on by default in the CLI was maybe just a little bit too much "magic" when processing the expression data. It'll be deprecated in the next release.

Great to hear about getting into co-expression analysis and using Camoco. Feel free to message me with any questions and/or comments. And of course, thanks again for the PR.