Environment
Which version of LinuxForHealth FHIR Server?
1.1.0
To Reproduce
Mirth Connect
Steps to reproduce the behavior:
I use the jar file in resources with all dependencies.
Here how I would like to use in Mirt connect channel:
var HL7ToFHIRConverter = Packages.io.github.linuxforhealth.hl7.HL7ToFHIRConverter;
var converter = new HL7ToFHIRConverter();
After I send the message I got error message:
Transformer error
ERROR MESSAGE: Error evaluating transformer
java.lang.NoClassDefFoundError: Could not initialize class io.github.linuxforhealth.hl7.data.SimpleDataTypeMapper
at io.github.linuxforhealth.hl7.expression.variable.DataTypeVariable.(DataTypeVariable.java:40)
at io.github.linuxforhealth.hl7.expression.variable.VariableGenerator.parse(VariableGenerator.java:47)
at io.github.linuxforhealth.hl7.expression.ExpressionAttributes.(ExpressionAttributes.java:91)
at io.github.linuxforhealth.hl7.expression.ExpressionAttributes$Builder.build(ExpressionAttributes.java:360)
at jdk.internal.reflect.GeneratedMethodAccessor212.invoke(Unknown Source)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
at java.base/java.lang.reflect.Method.invoke(Unknown Source)
at com.fasterxml.jackson.databind.deser.BuilderBasedDeserializer.finishBuild(BuilderBasedDeserializer.java:200)
at com.fasterxml.jackson.databind.deser.BuilderBasedDeserializer.deserialize(BuilderBasedDeserializer.java:217)
at com.fasterxml.jackson.databind.ObjectMapper._convert(ObjectMapper.java:4388)
at com.fasterxml.jackson.databind.ObjectMapper.convertValue(ObjectMapper.java:4324)
at io.github.linuxforhealth.hl7.resource.deserializer.HL7DataBasedResourceDeserializer.generateExpressions(HL7DataBasedResourceDeserializer.java:100)
at io.github.linuxforhealth.hl7.resource.deserializer.HL7DataBasedResourceDeserializer.deserialize(HL7DataBasedResourceDeserializer.java:69)
at io.github.linuxforhealth.hl7.resource.deserializer.HL7DataBasedResourceDeserializer.deserialize(HL7DataBasedResourceDeserializer.java:31)
at com.fasterxml.jackson.databind.deser.DefaultDeserializationContext.readRootValue(DefaultDeserializationContext.java:323)
at com.fasterxml.jackson.databind.ObjectMapper._readMapAndClose(ObjectMapper.java:4674)
at com.fasterxml.jackson.databind.ObjectMapper.readValue(ObjectMapper.java:3629)
at com.fasterxml.jackson.databind.ObjectMapper.readValue(ObjectMapper.java:3597)
at io.github.linuxforhealth.hl7.resource.ResourceReader.generateResourceModel(ResourceReader.java:215)
at io.github.linuxforhealth.hl7.message.HL7FHIRResourceTemplateAttributes.generateResourceModel(HL7FHIRResourceTemplateAttributes.java:91)
at io.github.linuxforhealth.hl7.message.HL7FHIRResourceTemplateAttributes.(HL7FHIRResourceTemplateAttributes.java:46)
at io.github.linuxforhealth.hl7.message.HL7FHIRResourceTemplateAttributes$Builder.build(HL7FHIRResourceTemplateAttributes.java:165)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
at java.base/java.lang.reflect.Method.invoke(Unknown Source)
at com.fasterxml.jackson.databind.deser.BuilderBasedDeserializer.finishBuild(BuilderBasedDeserializer.java:200)
at com.fasterxml.jackson.databind.deser.BuilderBasedDeserializer.deserialize(BuilderBasedDeserializer.java:217)
at com.fasterxml.jackson.databind.deser.std.CollectionDeserializer._deserializeFromArray(CollectionDeserializer.java:355)
at com.fasterxml.jackson.databind.deser.std.CollectionDeserializer.deserialize(CollectionDeserializer.java:244)
at com.fasterxml.jackson.databind.deser.std.CollectionDeserializer.deserialize(CollectionDeserializer.java:28)
at com.fasterxml.jackson.databind.ObjectMapper._convert(ObjectMapper.java:4388)
at com.fasterxml.jackson.databind.ObjectMapper.convertValue(ObjectMapper.java:4334)
at io.github.linuxforhealth.hl7.resource.ResourceReader.getMessageModel(ResourceReader.java:186)
at io.github.linuxforhealth.hl7.resource.ResourceReader.getMessageTemplates(ResourceReader.java:129)
at io.github.linuxforhealth.hl7.HL7ToFHIRConverter.(HL7ToFHIRConverter.java:55)
at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance(Unknown Source)
at java.base/jdk.internal.reflect.DelegatingConstructorAccessorImpl.newInstance(Unknown Source)
at java.base/java.lang.reflect.Constructor.newInstanceWithCaller(Unknown Source)
at java.base/java.lang.reflect.Constructor.newInstance(Unknown Source)
at org.mozilla.javascript.MemberBox.newInstance(MemberBox.java:171)
at org.mozilla.javascript.NativeJavaClass.constructInternal(NativeJavaClass.java:268)
at org.mozilla.javascript.NativeJavaClass.constructSpecific(NativeJavaClass.java:207)
at org.mozilla.javascript.NativeJavaClass.construct(NativeJavaClass.java:169)
at org.mozilla.javascript.Interpreter.interpretLoop(Interpreter.java:1736)
at org.mozilla.javascript.Interpreter.interpret(Interpreter.java:1013)
at org.mozilla.javascript.InterpretedFunction.call(InterpretedFunction.java:109)
at org.mozilla.javascript.ContextFactory.doTopCall(ContextFactory.java:412)
at org.mozilla.javascript.ScriptRuntime.doTopCall(ScriptRuntime.java:3578)
at org.mozilla.javascript.InterpretedFunction.exec(InterpretedFunction.java:121)
at com.mirth.connect.server.util.javascript.JavaScriptTask.executeScript(JavaScriptTask.java:151)
at com.mirth.connect.server.transformers.JavaScriptFilterTransformer$FilterTransformerTask.doCall(JavaScriptFilterTransformer.java:224)
at com.mirth.connect.server.transformers.JavaScriptFilterTransformer$FilterTransformerTask.doCall(JavaScriptFilterTransformer.java:187)
at com.mirth.connect.server.util.javascript.JavaScriptTask.call(JavaScriptTask.java:114)
at java.base/java.util.concurrent.FutureTask.run(Unknown Source)
at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source)
at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source)
at java.base/java.lang.Thread.run(Unknown Source)
Caused by: java.lang.ExceptionInInitializerError: Exception java.lang.NoClassDefFoundError: org/hl7/fhir/exceptions/FHIRException [in thread "Destination Filter/Transformer JavaScript Task on 1 EESZT Delete Request (78e13710-c652-42fd-bb34-20661155335a), Send to BSI (1) < pool-1-thread-11"]
at io.github.linuxforhealth.hl7.data.SimpleDataTypeMapper.(SimpleDataTypeMapper.java:13)
at io.github.linuxforhealth.hl7.expression.variable.DataTypeVariable.(DataTypeVariable.java:40)
at io.github.linuxforhealth.hl7.expression.variable.VariableGenerator.parse(VariableGenerator.java:47)
at io.github.linuxforhealth.hl7.expression.ExpressionAttributes.(ExpressionAttributes.java:91)
at io.github.linuxforhealth.hl7.expression.ExpressionAttributes$Builder.build(ExpressionAttributes.java:360)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
Do you have any idea where the problem is? Is it correct like this?
Describe the bug I got same error.
Environment Which version of LinuxForHealth FHIR Server? 1.1.0 To Reproduce Mirth Connect Steps to reproduce the behavior: I use the jar file in resources with all dependencies. Here how I would like to use in Mirt connect channel:
var HL7ToFHIRConverter = Packages.io.github.linuxforhealth.hl7.HL7ToFHIRConverter; var converter = new HL7ToFHIRConverter();
After I send the message I got error message: Transformer error ERROR MESSAGE: Error evaluating transformer java.lang.NoClassDefFoundError: Could not initialize class io.github.linuxforhealth.hl7.data.SimpleDataTypeMapper at io.github.linuxforhealth.hl7.expression.variable.DataTypeVariable.(DataTypeVariable.java:40)
at io.github.linuxforhealth.hl7.expression.variable.VariableGenerator.parse(VariableGenerator.java:47)
at io.github.linuxforhealth.hl7.expression.ExpressionAttributes.(ExpressionAttributes.java:91)
at io.github.linuxforhealth.hl7.expression.ExpressionAttributes$Builder.build(ExpressionAttributes.java:360)
at jdk.internal.reflect.GeneratedMethodAccessor212.invoke(Unknown Source)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
at java.base/java.lang.reflect.Method.invoke(Unknown Source)
at com.fasterxml.jackson.databind.deser.BuilderBasedDeserializer.finishBuild(BuilderBasedDeserializer.java:200)
at com.fasterxml.jackson.databind.deser.BuilderBasedDeserializer.deserialize(BuilderBasedDeserializer.java:217)
at com.fasterxml.jackson.databind.ObjectMapper._convert(ObjectMapper.java:4388)
at com.fasterxml.jackson.databind.ObjectMapper.convertValue(ObjectMapper.java:4324)
at io.github.linuxforhealth.hl7.resource.deserializer.HL7DataBasedResourceDeserializer.generateExpressions(HL7DataBasedResourceDeserializer.java:100)
at io.github.linuxforhealth.hl7.resource.deserializer.HL7DataBasedResourceDeserializer.deserialize(HL7DataBasedResourceDeserializer.java:69)
at io.github.linuxforhealth.hl7.resource.deserializer.HL7DataBasedResourceDeserializer.deserialize(HL7DataBasedResourceDeserializer.java:31)
at com.fasterxml.jackson.databind.deser.DefaultDeserializationContext.readRootValue(DefaultDeserializationContext.java:323)
at com.fasterxml.jackson.databind.ObjectMapper._readMapAndClose(ObjectMapper.java:4674)
at com.fasterxml.jackson.databind.ObjectMapper.readValue(ObjectMapper.java:3629)
at com.fasterxml.jackson.databind.ObjectMapper.readValue(ObjectMapper.java:3597)
at io.github.linuxforhealth.hl7.resource.ResourceReader.generateResourceModel(ResourceReader.java:215)
at io.github.linuxforhealth.hl7.message.HL7FHIRResourceTemplateAttributes.generateResourceModel(HL7FHIRResourceTemplateAttributes.java:91)
at io.github.linuxforhealth.hl7.message.HL7FHIRResourceTemplateAttributes.(HL7FHIRResourceTemplateAttributes.java:46)
at io.github.linuxforhealth.hl7.message.HL7FHIRResourceTemplateAttributes$Builder.build(HL7FHIRResourceTemplateAttributes.java:165)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
at java.base/java.lang.reflect.Method.invoke(Unknown Source)
at com.fasterxml.jackson.databind.deser.BuilderBasedDeserializer.finishBuild(BuilderBasedDeserializer.java:200)
at com.fasterxml.jackson.databind.deser.BuilderBasedDeserializer.deserialize(BuilderBasedDeserializer.java:217)
at com.fasterxml.jackson.databind.deser.std.CollectionDeserializer._deserializeFromArray(CollectionDeserializer.java:355)
at com.fasterxml.jackson.databind.deser.std.CollectionDeserializer.deserialize(CollectionDeserializer.java:244)
at com.fasterxml.jackson.databind.deser.std.CollectionDeserializer.deserialize(CollectionDeserializer.java:28)
at com.fasterxml.jackson.databind.ObjectMapper._convert(ObjectMapper.java:4388)
at com.fasterxml.jackson.databind.ObjectMapper.convertValue(ObjectMapper.java:4334)
at io.github.linuxforhealth.hl7.resource.ResourceReader.getMessageModel(ResourceReader.java:186)
at io.github.linuxforhealth.hl7.resource.ResourceReader.getMessageTemplates(ResourceReader.java:129)
at io.github.linuxforhealth.hl7.HL7ToFHIRConverter.(HL7ToFHIRConverter.java:55)
at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance(Unknown Source)
at java.base/jdk.internal.reflect.DelegatingConstructorAccessorImpl.newInstance(Unknown Source)
at java.base/java.lang.reflect.Constructor.newInstanceWithCaller(Unknown Source)
at java.base/java.lang.reflect.Constructor.newInstance(Unknown Source)
at org.mozilla.javascript.MemberBox.newInstance(MemberBox.java:171)
at org.mozilla.javascript.NativeJavaClass.constructInternal(NativeJavaClass.java:268)
at org.mozilla.javascript.NativeJavaClass.constructSpecific(NativeJavaClass.java:207)
at org.mozilla.javascript.NativeJavaClass.construct(NativeJavaClass.java:169)
at org.mozilla.javascript.Interpreter.interpretLoop(Interpreter.java:1736)
at org.mozilla.javascript.Interpreter.interpret(Interpreter.java:1013)
at org.mozilla.javascript.InterpretedFunction.call(InterpretedFunction.java:109)
at org.mozilla.javascript.ContextFactory.doTopCall(ContextFactory.java:412)
at org.mozilla.javascript.ScriptRuntime.doTopCall(ScriptRuntime.java:3578)
at org.mozilla.javascript.InterpretedFunction.exec(InterpretedFunction.java:121)
at com.mirth.connect.server.util.javascript.JavaScriptTask.executeScript(JavaScriptTask.java:151)
at com.mirth.connect.server.transformers.JavaScriptFilterTransformer$FilterTransformerTask.doCall(JavaScriptFilterTransformer.java:224)
at com.mirth.connect.server.transformers.JavaScriptFilterTransformer$FilterTransformerTask.doCall(JavaScriptFilterTransformer.java:187)
at com.mirth.connect.server.util.javascript.JavaScriptTask.call(JavaScriptTask.java:114)
at java.base/java.util.concurrent.FutureTask.run(Unknown Source)
at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source)
at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source)
at java.base/java.lang.Thread.run(Unknown Source)
Caused by: java.lang.ExceptionInInitializerError: Exception java.lang.NoClassDefFoundError: org/hl7/fhir/exceptions/FHIRException [in thread "Destination Filter/Transformer JavaScript Task on 1 EESZT Delete Request (78e13710-c652-42fd-bb34-20661155335a), Send to BSI (1) < pool-1-thread-11"]
at io.github.linuxforhealth.hl7.data.SimpleDataTypeMapper.(SimpleDataTypeMapper.java:13)
at io.github.linuxforhealth.hl7.expression.variable.DataTypeVariable.(DataTypeVariable.java:40)
at io.github.linuxforhealth.hl7.expression.variable.VariableGenerator.parse(VariableGenerator.java:47)
at io.github.linuxforhealth.hl7.expression.ExpressionAttributes.(ExpressionAttributes.java:91)
at io.github.linuxforhealth.hl7.expression.ExpressionAttributes$Builder.build(ExpressionAttributes.java:360)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
Do you have any idea where the problem is? Is it correct like this?