Build prototype of FHIR-to-OMOP mapping

LinuxForHealth / FHIR

The LinuxForHealth FHIR® Server and related projects

https://linuxforhealth.github.io/FHIR

Apache License 2.0

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Build prototype of FHIR-to-OMOP mapping #867

Closed JohnTimm closed 4 years ago

JohnTimm commented 4 years ago

Build FHIR-to-OMOP prototype based on mappings found here: https://www.ohdsi.org/web/wiki/doku.php?id=projects:workgroups:mappings_between_ohdsi_cdm_and_fhir and http://hl7.org/fhir/us/cdmh/2019May/index.html

JohnTimm commented 4 years ago

Created an experimental prototype that implements the following FHIR-to-OMOP mappings:

Condition -> CONDITION_OCCURRENCE Encounter -> VISIT_OCCURRENCE Organization -> CARE_SITE, LOCATION Patient -> PERSON, LOCATION Practitioner -> PROVIDER MedicationStatement, MedicationRequest, Medication -> DRUG_EXPOSURE

The initial prototype generates CSV data compatible with OHDSI OMOP Common Data Model v6.0. Additional work will be needed to support CDM v5.3.1.

lmsurpre commented 4 years ago

@JohnTimm which branch is this on?

JohnTimm commented 4 years ago

Prototype is in this branch: https://github.com/IBM/FHIR/tree/johntimm-master-omop