LinuxForHealth / hl7v2-fhir-converter

Converts HL7 v2 Messages to FHIR Resources
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Add missing systems #104

Closed cragun47 closed 3 years ago

cragun47 commented 3 years ago

Describe the bug The following systems are not recognized if found in valid HL7 V2.6 input.

Missing system NIP001 MVX system with url missing HL70163 needs to be added to coding system NCIT needs to be added to coding systems HL70064 system needs to be added to systems HL70162 coding system missing "Route of Administration" CDCREC HL70005

To Reproduce Create a message or segment and try converting.

Expected behavior When the message contains the sources used correctly, it should reference the correct system

Screenshots N/A

Desktop (please complete the following information):

Additional context

These are the proposed URLs for the following

NIP001

Depricated

MVX system with url missing

This is already present. The datatype needs to create the system.

- id: "MVX"
  description: "CDC Vaccine Manufacturer Codes"
  url: "http://terminology.hl7.org/CodeSystem/MVX"
  oid: "urn:oid:2.16.840.1.113883.6.60"

HL70163 needs to be added to coding system

- id: "HL70163"
  description: "bodySite"
  url: "http://terminology.hl7.org/CodeSystem/v2-0163"
  oid: "urn:oid:2.16.840.1.113883.18.81"

NCIT needs to be added to coding systems

- id: "NCIT"
  description: "NCI Thesaurus"
  url: "http://ncithesaurus-stage.nci.nih.gov"
  oid: "urn:oid:2.16.840.1.113883.3.26.1.1"

HL70064 system " Financial Class"

Recommended source CDC

- id: "HL70064"
  description: "Financial Class (HL7)"
  url: "https://phinvads.cdc.gov/vads/ViewCodeSystem.action?id=2.16.840.1.113883.12.64#"
  oid: "urn:oid:2.16.840.1.113883.12.64"

HL70162 coding system missing "Route of Administration"

HL7 Version 2 Table 0162

- id: "HL70162"
  description: "routeOfAdministration"
  url: "http://terminology.hl7.org/CodeSystem/v2-0162"
  oid: "urn:oid:2.16.840.1.113883.18.80"  

CDCREC

- id: "CDCREC"
  description: "RaceAndEthnicityCDC"
  url: "http://hl7.org/fhir/us/core/CodeSystem-cdcrec.html"
  oid: "urn:oid:2.16.840.1.113883.6.238"

HL70005

cragun47 commented 3 years ago

It turns out NIP001 is a deprecated coding system, so that was not changed.

cragun47 commented 3 years ago

In Release 1.0.8