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:beer::penguin: The Homebrew package manager for Linux
https://linuxbrew.sh
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Why go in linuxbrew is not updated? #567

Closed pengyu closed 6 years ago

pengyu commented 6 years ago

With linuxbrew, I have.

$ brew upgrade go
Error: go 1.7.1 already installed

With homebrew, I have.

$ brew upgrade go
Error: go 1.9.2 already installed

Why the one on linuxbrew is not updated?

iMichka commented 6 years ago

Hi. We have go 1.9.2 since some time in Linuxbrew. Did you run brew update before? Also, could you provide the output of brew config?

pengyu commented 6 years ago

Here are what I have. I am not sure what they exactly mean.

$ brew update
Updated 1 tap (caskroom/cask).
Warning: Calling fails_with :llvm is deprecated!
There is no replacement.
/home/py/.linuxbrew/Library/Taps/homebrew/homebrew-core/Formula/gawk.rb:16:in `<class:Gawk>'
Please report this to the homebrew/core tap!

Warning: Calling fails_with :llvm is deprecated!
There is no replacement.
/home/py/.linuxbrew/Library/Taps/homebrew/homebrew-core/Formula/gawk.rb:16:in `<class:Gawk>'
Please report this to the homebrew/core tap!

Warning: Calling fails_with :llvm is deprecated!
There is no replacement.
/home/py/.linuxbrew/Library/Taps/homebrew/homebrew-core/Formula/gawk.rb:16:in `<class:Gawk>'
Please report this to the homebrew/core tap!

Warning: Calling fails_with :llvm is deprecated!
There is no replacement.
/home/py/.linuxbrew/Library/Taps/homebrew/homebrew-core/Formula/gawk.rb:16:in `<class:Gawk>'
Please report this to the homebrew/core tap!

Warning: Calling BottleSpecification.revision is deprecated!
Use BottleSpecification.rebuild instead.
/home/py/.linuxbrew/Library/Taps/homebrew/homebrew-core/Formula/gpatch.rb:10:in `block in <class:Gpatch>'
Please report this to the homebrew/core tap!

Warning: Calling BottleSpecification.revision is deprecated!
Use BottleSpecification.rebuild instead.
/home/py/.linuxbrew/Library/Taps/homebrew/homebrew-core/Formula/zlib.rb:10:in `block in <class:Zlib>'
Please report this to the homebrew/core tap!

Warning: Calling fails_with :llvm is deprecated!
There is no replacement.
/home/py/.linuxbrew/Library/Taps/homebrew/homebrew-core/Formula/libxml2.rb:32:in `<class:Libxml2>'
Please report this to the homebrew/core tap!

Warning: Calling fails_with :llvm is deprecated!
There is no replacement.
/home/py/.linuxbrew/Library/Taps/homebrew/homebrew-core/Formula/libxml2.rb:32:in `<class:Libxml2>'
Please report this to the homebrew/core tap!

Warning: Calling fails_with :llvm is deprecated!
There is no replacement.
/home/py/.linuxbrew/Library/Taps/homebrew/homebrew-core/Formula/libxml2.rb:32:in `<class:Libxml2>'
Please report this to the homebrew/core tap!

Warning: Calling fails_with :llvm is deprecated!
There is no replacement.
/home/py/.linuxbrew/Library/Taps/homebrew/homebrew-core/Formula/libxml2.rb:32:in `<class:Libxml2>'
Please report this to the homebrew/core tap!

Warning: Calling BottleSpecification.revision is deprecated!
Use BottleSpecification.rebuild instead.
/home/py/.linuxbrew/Library/Taps/homebrew/homebrew-core/Formula/bzip2.rb:10:in `block in <class:Bzip2>'
Please report this to the homebrew/core tap!

Warning: Calling fails_with :llvm is deprecated!
There is no replacement.
/home/py/.linuxbrew/Library/Taps/homebrew/homebrew-core/Formula/pcre.rb:28:in `<class:Pcre>'
Please report this to the homebrew/core tap!

Warning: Calling fails_with :llvm is deprecated!
There is no replacement.
/home/py/.linuxbrew/Library/Taps/homebrew/homebrew-core/Formula/pcre.rb:28:in `<class:Pcre>'
Please report this to the homebrew/core tap!

Warning: Calling fails_with :llvm is deprecated!
There is no replacement.
/home/py/.linuxbrew/Library/Taps/homebrew/homebrew-core/Formula/pcre.rb:28:in `<class:Pcre>'
Please report this to the homebrew/core tap!

Warning: Calling fails_with :llvm is deprecated!
There is no replacement.
/home/py/.linuxbrew/Library/Taps/homebrew/homebrew-core/Formula/pcre.rb:28:in `<class:Pcre>'
Please report this to the homebrew/core tap!

Warning: Calling fails_with :llvm is deprecated!
There is no replacement.
/home/py/.linuxbrew/Library/Taps/homebrew/homebrew-core/Formula/pixman.rb:22:in `<class:Pixman>'
Please report this to the homebrew/core tap!

Warning: Calling fails_with :llvm is deprecated!
There is no replacement.
/home/py/.linuxbrew/Library/Taps/homebrew/homebrew-core/Formula/pixman.rb:22:in `<class:Pixman>'
Please report this to the homebrew/core tap!

Warning: Calling fails_with :llvm is deprecated!
There is no replacement.
/home/py/.linuxbrew/Library/Taps/homebrew/homebrew-core/Formula/pixman.rb:22:in `<class:Pixman>'
Please report this to the homebrew/core tap!

Warning: Calling fails_with :llvm is deprecated!
There is no replacement.
/home/py/.linuxbrew/Library/Taps/homebrew/homebrew-core/Formula/pixman.rb:22:in `<class:Pixman>'
Please report this to the homebrew/core tap!

Warning: Calling fails_with :llvm is deprecated!
There is no replacement.
/home/py/.linuxbrew/Library/Taps/homebrew/homebrew-core/Formula/glib.rb:24:in `<class:Glib>'
Please report this to the homebrew/core tap!

Warning: Calling fails_with :llvm is deprecated!
There is no replacement.
/home/py/.linuxbrew/Library/Taps/homebrew/homebrew-core/Formula/glib.rb:24:in `<class:Glib>'
Please report this to the homebrew/core tap!

Warning: Calling fails_with :llvm is deprecated!
There is no replacement.
/home/py/.linuxbrew/Library/Taps/homebrew/homebrew-core/Formula/glib.rb:24:in `<class:Glib>'
Please report this to the homebrew/core tap!

Warning: Calling fails_with :llvm is deprecated!
There is no replacement.
/home/py/.linuxbrew/Library/Taps/homebrew/homebrew-core/Formula/glib.rb:24:in `<class:Glib>'
Please report this to the homebrew/core tap!

Warning: Calling fails_with :llvm is deprecated!
There is no replacement.
/home/py/.linuxbrew/Library/Taps/homebrew/homebrew-core/Formula/libevent.rb:53:in `<class:Libevent>'
Please report this to the homebrew/core tap!

Warning: Calling fails_with :llvm is deprecated!
There is no replacement.
/home/py/.linuxbrew/Library/Taps/homebrew/homebrew-core/Formula/libevent.rb:53:in `<class:Libevent>'
Please report this to the homebrew/core tap!

Warning: Calling fails_with :llvm is deprecated!
There is no replacement.
/home/py/.linuxbrew/Library/Taps/homebrew/homebrew-core/Formula/libevent.rb:53:in `<class:Libevent>'
Please report this to the homebrew/core tap!

Warning: Calling fails_with :llvm is deprecated!
There is no replacement.
/home/py/.linuxbrew/Library/Taps/homebrew/homebrew-core/Formula/libevent.rb:53:in `<class:Libevent>'
Please report this to the homebrew/core tap!

~$ brew config
HOMEBREW_VERSION: 1.4.3
ORIGIN: https://github.com/Linuxbrew/brew.git
HEAD: c85a991d105d19b55216f85e5f82b1eae2766e3b
Last commit: 5 days ago
Core tap ORIGIN: https://github.com/Linuxbrew/brew.git
Core tap HEAD: c85a991d105d19b55216f85e5f82b1eae2766e3b
Core tap last commit: 5 days ago
HOMEBREW_PREFIX: /home/py/.linuxbrew
HOMEBREW_REPOSITORY: /home/py/.linuxbrew
HOMEBREW_CELLAR: /home/py/.linuxbrew/Cellar
HOMEBREW_CACHE: /home/py/.cache/Homebrew
HOMEBREW_CELLAR: /home/py/.linuxbrew/Cellar
HOMEBREW_PREFIX: /home/py/.linuxbrew
HOMEBREW_REPOSITORY: /home/py/.linuxbrew
CPU: 32-core 64-bit 0x602
Homebrew Ruby: 2.3.3 => /home/py/.linuxbrew/Library/Homebrew/vendor/portable-ruby/2.3.3/bin/ruby
Clang: N/A
Git: 2.8.1 => /usr/bin/git
Curl: 7.50.3 => /home/py/.linuxbrew/opt/curl/bin/curl
Perl: /opt/ActivePerl-5.18/bin/perl => /opt/ActivePerl-5.18/bin/perl-static
Python: /home/py/.linuxbrew/bin/python => /home/py/.linuxbrew/Cellar/python/2.7.12_3/bin/python2.7
Ruby: /usr/local/bin/ruby
Java: 1.7.0_55
Kernel: Linux 3.13.0-128-generic x86_64 GNU/Linux
OS: Ubuntu 14.04.5 LTS (trusty)
Host glibc: 2.19
/usr/bin/gcc: 4.8.4
glibc: N/A
Warning: Calling fails_with :llvm is deprecated!
There is no replacement.
/home/py/.linuxbrew/Library/Taps/homebrew/homebrew-core/Formula/gcc.rb:66:in `<class:Gcc>'
Please report this to the homebrew/core tap!

Warning: Calling fails_with :llvm is deprecated!
There is no replacement.
/home/py/.linuxbrew/Library/Taps/homebrew/homebrew-core/Formula/gcc.rb:66:in `<class:Gcc>'
Please report this to the homebrew/core tap!

Warning: Calling fails_with :llvm is deprecated!
There is no replacement.
/home/py/.linuxbrew/Library/Taps/homebrew/homebrew-core/Formula/gcc.rb:66:in `<class:Gcc>'
Please report this to the homebrew/core tap!

Warning: Calling fails_with :llvm is deprecated!
There is no replacement.
/home/py/.linuxbrew/Library/Taps/homebrew/homebrew-core/Formula/gcc.rb:66:in `<class:Gcc>'
Please report this to the homebrew/core tap!

gcc: N/A
xorg: 20170115
iMichka commented 6 years ago

This is weird. Warning: Calling fails_with :llvm is deprecated! is an old warning that should be gone now.

Can you try: brew update-reset brew upgrade

This will reset everything and upgrade all packages.

sjackman commented 6 years ago 
❯❯❯ cd $(brew --repo homebrew/core)
❯❯❯ git show c85a991d105d19b55216f85e5f82b1eae2766e3b
fatal: bad object c85a991d105d19b55216f85e5f82b1eae2766e3b

It looks as though perhaps you're on a local branch. Michka's suggestion should help.

sjackman commented 6 years ago 
Core tap ORIGIN: https://github.com/Linuxbrew/brew.git
Core tap HEAD: c85a991d105d19b55216f85e5f82b1eae2766e3b

Even weirder, c85a991d105d19b55216f85e5f82b1eae2766e3b is actually a Linuxbrew/brew commit. I'm not sure why brew config is reporting that the remote of your homebrew/core tap is https://github.com/Linuxbrew/brew.git. Something is quite broken. Check the output of brew doctor, and consider reinstalling Linuxbrew.

pengyu commented 6 years ago

Here is the output of brew doctor. Does anybody see what is wrong? I'd rather avoid reinstalling linuxbrew as it can take a long time to compile everything.

$ brew doctor
Please note that these warnings are just used to help the Homebrew maintainers
with debugging if you file an issue. If everything you use Homebrew for is
working fine: please don't worry or file an issue; just ignore this. Thanks!

Warning: "config" scripts exist outside your system or Homebrew directories.
`./configure` scripts often look for *-config scripts to determine if
software packages are installed, and what additional flags to use when
compiling and linking.

Having additional scripts in your path can confuse software installed via
Homebrew if the config script overrides a system or Homebrew provided
script of the same name. We found the following "config" scripts:
  /opt/binary/bin/vdb-config
  /usr/local/bin/python2.7-config
  /usr/local/bin/python2-config
  /usr/local/bin/python-config
  /usr/local/bin/sup-config

Warning: Unbrewed header files were found in /usr/local/include.
If you didn't put them there on purpose they could cause problems when
building Homebrew formulae, and may need to be deleted.

Unexpected header files:
  /usr/local/include/gtest/gtest-death-test.h
  /usr/local/include/gtest/gtest-message.h
  /usr/local/include/gtest/gtest-param-test.h
  /usr/local/include/gtest/gtest-printers.h
  /usr/local/include/gtest/gtest-spi.h
  /usr/local/include/gtest/gtest-test-part.h
  /usr/local/include/gtest/gtest-typed-test.h
  /usr/local/include/gtest/gtest.h
  /usr/local/include/gtest/gtest_pred_impl.h
  /usr/local/include/gtest/gtest_prod.h
  /usr/local/include/gtest/internal/gtest-death-test-internal.h
  /usr/local/include/gtest/internal/gtest-filepath.h
  /usr/local/include/gtest/internal/gtest-internal.h
  /usr/local/include/gtest/internal/gtest-linked_ptr.h
  /usr/local/include/gtest/internal/gtest-param-util-generated.h
  /usr/local/include/gtest/internal/gtest-param-util.h
  /usr/local/include/gtest/internal/gtest-port.h
  /usr/local/include/gtest/internal/gtest-string.h
  /usr/local/include/gtest/internal/gtest-tuple.h
  /usr/local/include/gtest/internal/gtest-type-util.h
  /usr/local/include/pocketsphinx/cmdln_macro.h
  /usr/local/include/pocketsphinx/pocketsphinx.h
  /usr/local/include/pocketsphinx/pocketsphinx_export.h
  /usr/local/include/pocketsphinx/ps_lattice.h
  /usr/local/include/pocketsphinx/ps_mllr.h
  /usr/local/include/pocketsphinx/ps_search.h
  /usr/local/include/python2.7/Python-ast.h
  /usr/local/include/python2.7/Python.h
  /usr/local/include/python2.7/abstract.h
  /usr/local/include/python2.7/asdl.h
  /usr/local/include/python2.7/ast.h
  /usr/local/include/python2.7/bitset.h
  /usr/local/include/python2.7/boolobject.h
  /usr/local/include/python2.7/bufferobject.h
  /usr/local/include/python2.7/bytearrayobject.h
  /usr/local/include/python2.7/bytes_methods.h
  /usr/local/include/python2.7/bytesobject.h
  /usr/local/include/python2.7/cStringIO.h
  /usr/local/include/python2.7/cellobject.h
  /usr/local/include/python2.7/ceval.h
  /usr/local/include/python2.7/classobject.h
  /usr/local/include/python2.7/cobject.h
  /usr/local/include/python2.7/code.h
  /usr/local/include/python2.7/codecs.h
  /usr/local/include/python2.7/compile.h
  /usr/local/include/python2.7/complexobject.h
  /usr/local/include/python2.7/datetime.h
  /usr/local/include/python2.7/descrobject.h
  /usr/local/include/python2.7/dictobject.h
  /usr/local/include/python2.7/dtoa.h
  /usr/local/include/python2.7/enumobject.h
  /usr/local/include/python2.7/errcode.h
  /usr/local/include/python2.7/eval.h
  /usr/local/include/python2.7/fileobject.h
  /usr/local/include/python2.7/floatobject.h
  /usr/local/include/python2.7/frameobject.h
  /usr/local/include/python2.7/funcobject.h
  /usr/local/include/python2.7/genobject.h
  /usr/local/include/python2.7/graminit.h
  /usr/local/include/python2.7/grammar.h
  /usr/local/include/python2.7/import.h
  /usr/local/include/python2.7/intobject.h
  /usr/local/include/python2.7/intrcheck.h
  /usr/local/include/python2.7/iterobject.h
  /usr/local/include/python2.7/listobject.h
  /usr/local/include/python2.7/longintrepr.h
  /usr/local/include/python2.7/longobject.h
  /usr/local/include/python2.7/marshal.h
  /usr/local/include/python2.7/memoryobject.h
  /usr/local/include/python2.7/metagrammar.h
  /usr/local/include/python2.7/methodobject.h
  /usr/local/include/python2.7/modsupport.h
  /usr/local/include/python2.7/moduleobject.h
  /usr/local/include/python2.7/node.h
  /usr/local/include/python2.7/object.h
  /usr/local/include/python2.7/objimpl.h
  /usr/local/include/python2.7/opcode.h
  /usr/local/include/python2.7/osdefs.h
  /usr/local/include/python2.7/parsetok.h
  /usr/local/include/python2.7/patchlevel.h
  /usr/local/include/python2.7/pgen.h
  /usr/local/include/python2.7/pgenheaders.h
  /usr/local/include/python2.7/py_curses.h
  /usr/local/include/python2.7/pyarena.h
  /usr/local/include/python2.7/pycapsule.h
  /usr/local/include/python2.7/pyconfig.h
  /usr/local/include/python2.7/pyctype.h
  /usr/local/include/python2.7/pydebug.h
  /usr/local/include/python2.7/pyerrors.h
  /usr/local/include/python2.7/pyexpat.h
  /usr/local/include/python2.7/pyfpe.h
  /usr/local/include/python2.7/pygetopt.h
  /usr/local/include/python2.7/pymacconfig.h
  /usr/local/include/python2.7/pymactoolbox.h
  /usr/local/include/python2.7/pymath.h
  /usr/local/include/python2.7/pymem.h
  /usr/local/include/python2.7/pyport.h
  /usr/local/include/python2.7/pystate.h
  /usr/local/include/python2.7/pystrcmp.h
  /usr/local/include/python2.7/pystrtod.h
  /usr/local/include/python2.7/pythonrun.h
  /usr/local/include/python2.7/pythread.h
  /usr/local/include/python2.7/rangeobject.h
  /usr/local/include/python2.7/setobject.h
  /usr/local/include/python2.7/sliceobject.h
  /usr/local/include/python2.7/stringobject.h
  /usr/local/include/python2.7/structmember.h
  /usr/local/include/python2.7/structseq.h
  /usr/local/include/python2.7/symtable.h
  /usr/local/include/python2.7/sysmodule.h
  /usr/local/include/python2.7/timefuncs.h
  /usr/local/include/python2.7/token.h
  /usr/local/include/python2.7/traceback.h
  /usr/local/include/python2.7/tupleobject.h
  /usr/local/include/python2.7/ucnhash.h
  /usr/local/include/python2.7/unicodeobject.h
  /usr/local/include/python2.7/warnings.h
  /usr/local/include/python2.7/weakrefobject.h
  /usr/local/include/ruby-2.0.0/ruby.h
  /usr/local/include/ruby-2.0.0/ruby/backward/classext.h
  /usr/local/include/ruby-2.0.0/ruby/backward/rubyio.h
  /usr/local/include/ruby-2.0.0/ruby/backward/rubysig.h
  /usr/local/include/ruby-2.0.0/ruby/backward/st.h
  /usr/local/include/ruby-2.0.0/ruby/backward/util.h
  /usr/local/include/ruby-2.0.0/ruby/debug.h
  /usr/local/include/ruby-2.0.0/ruby/defines.h
  /usr/local/include/ruby-2.0.0/ruby/digest.h
  /usr/local/include/ruby-2.0.0/ruby/dl.h
  /usr/local/include/ruby-2.0.0/ruby/encoding.h
  /usr/local/include/ruby-2.0.0/ruby/intern.h
  /usr/local/include/ruby-2.0.0/ruby/io.h
  /usr/local/include/ruby-2.0.0/ruby/missing.h
  /usr/local/include/ruby-2.0.0/ruby/oniguruma.h
  /usr/local/include/ruby-2.0.0/ruby/re.h
  /usr/local/include/ruby-2.0.0/ruby/regex.h
  /usr/local/include/ruby-2.0.0/ruby/ruby.h
  /usr/local/include/ruby-2.0.0/ruby/st.h
  /usr/local/include/ruby-2.0.0/ruby/subst.h
  /usr/local/include/ruby-2.0.0/ruby/thread.h
  /usr/local/include/ruby-2.0.0/ruby/util.h
  /usr/local/include/ruby-2.0.0/ruby/version.h
  /usr/local/include/ruby-2.0.0/ruby/vm.h
  /usr/local/include/ruby-2.0.0/x86_64-linux/ruby/config.h
  /usr/local/include/ruby-2.2.0/ruby.h
  /usr/local/include/ruby-2.2.0/ruby/backward/classext.h
  /usr/local/include/ruby-2.2.0/ruby/backward/rubyio.h
  /usr/local/include/ruby-2.2.0/ruby/backward/rubysig.h
  /usr/local/include/ruby-2.2.0/ruby/backward/st.h
  /usr/local/include/ruby-2.2.0/ruby/backward/util.h
  /usr/local/include/ruby-2.2.0/ruby/debug.h
  /usr/local/include/ruby-2.2.0/ruby/defines.h
  /usr/local/include/ruby-2.2.0/ruby/digest.h
  /usr/local/include/ruby-2.2.0/ruby/encoding.h
  /usr/local/include/ruby-2.2.0/ruby/intern.h
  /usr/local/include/ruby-2.2.0/ruby/io.h
  /usr/local/include/ruby-2.2.0/ruby/missing.h
  /usr/local/include/ruby-2.2.0/ruby/oniguruma.h
  /usr/local/include/ruby-2.2.0/ruby/re.h
  /usr/local/include/ruby-2.2.0/ruby/regex.h
  /usr/local/include/ruby-2.2.0/ruby/ruby.h
  /usr/local/include/ruby-2.2.0/ruby/st.h
  /usr/local/include/ruby-2.2.0/ruby/subst.h
  /usr/local/include/ruby-2.2.0/ruby/thread.h
  /usr/local/include/ruby-2.2.0/ruby/thread_native.h
  /usr/local/include/ruby-2.2.0/ruby/util.h
  /usr/local/include/ruby-2.2.0/ruby/version.h
  /usr/local/include/ruby-2.2.0/ruby/vm.h
  /usr/local/include/ruby-2.2.0/x86_64-linux/ruby/config.h
  /usr/local/include/seqan/align.h
  /usr/local/include/seqan/align/align_base.h
  /usr/local/include/seqan/align/align_cols.h
  /usr/local/include/seqan/align/align_config.h
  /usr/local/include/seqan/align/align_iterator_base.h
  /usr/local/include/seqan/align/align_metafunctions.h
  /usr/local/include/seqan/align/align_traceback.h
  /usr/local/include/seqan/align/alignment_algorithm_tags.h
  /usr/local/include/seqan/align/alignment_operations.h
  /usr/local/include/seqan/align/dp_algorithm_impl.h
  /usr/local/include/seqan/align/dp_band.h
  /usr/local/include/seqan/align/dp_cell.h
  /usr/local/include/seqan/align/dp_cell_affine.h
  /usr/local/include/seqan/align/dp_cell_dynamic.h
  /usr/local/include/seqan/align/dp_cell_linear.h
  /usr/local/include/seqan/align/dp_context.h
  /usr/local/include/seqan/align/dp_formula.h
  /usr/local/include/seqan/align/dp_formula_affine.h
  /usr/local/include/seqan/align/dp_formula_dynamic.h
  /usr/local/include/seqan/align/dp_formula_linear.h
  /usr/local/include/seqan/align/dp_matrix.h
  /usr/local/include/seqan/align/dp_matrix_navigator.h
  /usr/local/include/seqan/align/dp_matrix_navigator_score_matrix.h
  /usr/local/include/seqan/align/dp_matrix_navigator_score_matrix_sparse.h
  /usr/local/include/seqan/align/dp_matrix_navigator_trace_matrix.h
  /usr/local/include/seqan/align/dp_matrix_sparse.h
  /usr/local/include/seqan/align/dp_meta_info.h
  /usr/local/include/seqan/align/dp_profile.h
  /usr/local/include/seqan/align/dp_scout.h
  /usr/local/include/seqan/align/dp_setup.h
  /usr/local/include/seqan/align/dp_trace_segment.h
  /usr/local/include/seqan/align/dp_traceback_adaptor.h
  /usr/local/include/seqan/align/dp_traceback_impl.h
  /usr/local/include/seqan/align/evaluate_alignment.h
  /usr/local/include/seqan/align/fragment.h
  /usr/local/include/seqan/align/gap_anchor.h
  /usr/local/include/seqan/align/gapped_value_type.h
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Warning: Unbrewed .la files were found in /usr/local/lib.
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Unexpected .la files:
  /usr/local/lib/libpocketsphinx.la
  /usr/local/lib/libsphinxad.la
  /usr/local/lib/libsphinxbase.la

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  /usr/local/lib/pkgconfig/pocketsphinx.pc
  /usr/local/lib/pkgconfig/python-2.7.pc
  /usr/local/lib/pkgconfig/ruby-2.0.pc
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Unexpected static libraries:
  /usr/local/lib/libgtest.a
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  /usr/local/lib/libpython2.7.a
  /usr/local/lib/libruby-static.a
  /usr/local/lib/libsphinxad.a
  /usr/local/lib/libsphinxbase.a
Warning: Calling fails_with :llvm is deprecated!
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/home/py/.linuxbrew/Library/Taps/homebrew/homebrew-core/Formula/gawk.rb:16:in `<class:Gawk>'
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Warning: Calling fails_with :llvm is deprecated!
There is no replacement.
/home/py/.linuxbrew/Library/Taps/homebrew/homebrew-core/Formula/pixman.rb:22:in `<class:Pixman>'
Please report this to the homebrew/core tap!

Warning: Calling fails_with :llvm is deprecated!
There is no replacement.
/home/py/.linuxbrew/Library/Taps/homebrew/homebrew-core/Formula/pixman.rb:22:in `<class:Pixman>'
Please report this to the homebrew/core tap!

Warning: Calling fails_with :llvm is deprecated!
There is no replacement.
/home/py/.linuxbrew/Library/Taps/homebrew/homebrew-core/Formula/glib.rb:24:in `<class:Glib>'
Please report this to the homebrew/core tap!

Warning: Calling fails_with :llvm is deprecated!
There is no replacement.
/home/py/.linuxbrew/Library/Taps/homebrew/homebrew-core/Formula/glib.rb:24:in `<class:Glib>'
Please report this to the homebrew/core tap!

Warning: Calling fails_with :llvm is deprecated!
There is no replacement.
/home/py/.linuxbrew/Library/Taps/homebrew/homebrew-core/Formula/glib.rb:24:in `<class:Glib>'
Please report this to the homebrew/core tap!

Warning: Calling fails_with :llvm is deprecated!
There is no replacement.
/home/py/.linuxbrew/Library/Taps/homebrew/homebrew-core/Formula/glib.rb:24:in `<class:Glib>'
Please report this to the homebrew/core tap!

Warning: Calling fails_with :llvm is deprecated!
There is no replacement.
/home/py/.linuxbrew/Library/Taps/homebrew/homebrew-core/Formula/libevent.rb:53:in `<class:Libevent>'
Please report this to the homebrew/core tap!

Warning: Calling fails_with :llvm is deprecated!
There is no replacement.
/home/py/.linuxbrew/Library/Taps/homebrew/homebrew-core/Formula/libevent.rb:53:in `<class:Libevent>'
Please report this to the homebrew/core tap!

Warning: Calling fails_with :llvm is deprecated!
There is no replacement.
/home/py/.linuxbrew/Library/Taps/homebrew/homebrew-core/Formula/libevent.rb:53:in `<class:Libevent>'
Please report this to the homebrew/core tap!

Warning: Calling fails_with :llvm is deprecated!
There is no replacement.
/home/py/.linuxbrew/Library/Taps/homebrew/homebrew-core/Formula/libevent.rb:53:in `<class:Libevent>'
Please report this to the homebrew/core tap!

Warning: Use ncurses instead of deprecated homebrew/dupes/ncurses
Warning: Use ncurses instead of deprecated homebrew/dupes/ncurses
Warning: Use ncurses instead of deprecated homebrew/dupes/ncurses
Warning: Use ncurses instead of deprecated homebrew/dupes/ncurses
Warning: Use ncurses instead of deprecated homebrew/dupes/ncurses
Warning: Use ncurses instead of deprecated homebrew/dupes/ncurses
Warning: Use ncurses instead of deprecated homebrew/dupes/ncurses
Warning: Use ncurses instead of deprecated homebrew/dupes/ncurses
Warning: Use ncurses instead of deprecated homebrew/dupes/ncurses
Warning: Use m4 instead of deprecated homebrew/dupes/m4
Warning: Use ncurses instead of deprecated homebrew/dupes/ncurses
Warning: Use ncurses instead of deprecated homebrew/dupes/ncurses
Warning: Use ncurses instead of deprecated homebrew/dupes/ncurses
Warning: Use ncurses instead of deprecated homebrew/dupes/ncurses
Warning: Use ncurses instead of deprecated homebrew/dupes/ncurses
Warning: Use ncurses instead of deprecated homebrew/dupes/ncurses
Warning: Use m4 instead of deprecated homebrew/dupes/m4
Warning: Use m4 instead of deprecated homebrew/dupes/m4
Warning: Use ncurses instead of deprecated homebrew/dupes/ncurses

Warning: Some installed formula are missing dependencies.
You should `brew install` the missing dependencies:
  brew install libxaw3d xdpyinfo

Run `brew missing` for more details.
sjackman commented 6 years ago

Have you tried brew update-reset?

pengyu commented 6 years ago

@sjackman Yes, I have. But it does not solve the problem.

$ brew update-reset
==> Fetching /home/py/.linuxbrew...

==> Resetting /home/py/.linuxbrew...
Branch master set up to track remote branch master from origin.
Reset branch 'master'
Your branch is up-to-date with 'origin/master'.

==> Fetching /home/py/.linuxbrew/Library/Taps/caskroom/homebrew-cask...

==> Resetting /home/py/.linuxbrew/Library/Taps/caskroom/homebrew-cask...
Branch master set up to track remote branch master from origin.
Reset branch 'master'
Your branch is up-to-date with 'origin/master'.

==> Fetching /home/py/.linuxbrew/Library/Taps/homebrew/homebrew-core...

==> Resetting /home/py/.linuxbrew/Library/Taps/homebrew/homebrew-core...
Branch master set up to track remote branch master from origin.
Reset branch 'master'
Your branch is up-to-date with 'origin/master'.

==> Fetching /home/py/.linuxbrew/Library/Taps/homebrew/homebrew-nginx...

==> Resetting /home/py/.linuxbrew/Library/Taps/homebrew/homebrew-nginx...
Branch master set up to track remote branch master from origin.
Reset branch 'master'
Your branch is up-to-date with 'origin/master'.

==> Fetching /home/py/.linuxbrew/Library/Taps/homebrew/homebrew-science...

==> Resetting /home/py/.linuxbrew/Library/Taps/homebrew/homebrew-science...
Branch master set up to track remote branch master from origin.
Reset branch 'master'
Your branch is up-to-date with 'origin/master'.

==> Fetching /home/py/.linuxbrew/Library/Taps/linuxbrew/homebrew-xorg...

==> Resetting /home/py/.linuxbrew/Library/Taps/linuxbrew/homebrew-xorg...
Branch master set up to track remote branch master from origin.
Reset branch 'master'
Your branch is up-to-date with 'origin/master'.

==> Fetching /home/py/.linuxbrew/Library/Taps/watsonbox/homebrew-cmu-sphinx...

==> Resetting /home/py/.linuxbrew/Library/Taps/watsonbox/homebrew-cmu-sphinx...
Branch master set up to track remote branch master from origin.
Reset branch 'master'
Your branch is up-to-date with 'origin/master'.

$ brew upgrade
Warning: Calling fails_with :llvm is deprecated!
There is no replacement.
/home/py/.linuxbrew/Library/Taps/homebrew/homebrew-core/Formula/gawk.rb:16:in `<class:Gawk>'
Please report this to the homebrew/core tap!

Warning: Calling fails_with :llvm is deprecated!
There is no replacement.
/home/py/.linuxbrew/Library/Taps/homebrew/homebrew-core/Formula/gawk.rb:16:in `<class:Gawk>'
Please report this to the homebrew/core tap!

Warning: Calling fails_with :llvm is deprecated!
There is no replacement.
/home/py/.linuxbrew/Library/Taps/homebrew/homebrew-core/Formula/gawk.rb:16:in `<class:Gawk>'
Please report this to the homebrew/core tap!

Warning: Calling fails_with :llvm is deprecated!
There is no replacement.
/home/py/.linuxbrew/Library/Taps/homebrew/homebrew-core/Formula/gawk.rb:16:in `<class:Gawk>'
Please report this to the homebrew/core tap!

Warning: Calling BottleSpecification.revision is deprecated!
Use BottleSpecification.rebuild instead.
/home/py/.linuxbrew/Library/Taps/homebrew/homebrew-core/Formula/gpatch.rb:10:in `block in <class:Gpatch>'
Please report this to the homebrew/core tap!

Warning: Calling BottleSpecification.revision is deprecated!
Use BottleSpecification.rebuild instead.
/home/py/.linuxbrew/Library/Taps/homebrew/homebrew-core/Formula/zlib.rb:10:in `block in <class:Zlib>'
Please report this to the homebrew/core tap!

Warning: Calling fails_with :llvm is deprecated!
There is no replacement.
/home/py/.linuxbrew/Library/Taps/homebrew/homebrew-core/Formula/libxml2.rb:32:in `<class:Libxml2>'
Please report this to the homebrew/core tap!

Warning: Calling fails_with :llvm is deprecated!
There is no replacement.
/home/py/.linuxbrew/Library/Taps/homebrew/homebrew-core/Formula/libxml2.rb:32:in `<class:Libxml2>'
Please report this to the homebrew/core tap!

Warning: Calling fails_with :llvm is deprecated!
There is no replacement.
/home/py/.linuxbrew/Library/Taps/homebrew/homebrew-core/Formula/libxml2.rb:32:in `<class:Libxml2>'
Please report this to the homebrew/core tap!

Warning: Calling fails_with :llvm is deprecated!
There is no replacement.
/home/py/.linuxbrew/Library/Taps/homebrew/homebrew-core/Formula/libxml2.rb:32:in `<class:Libxml2>'
Please report this to the homebrew/core tap!

Warning: Calling BottleSpecification.revision is deprecated!
Use BottleSpecification.rebuild instead.
/home/py/.linuxbrew/Library/Taps/homebrew/homebrew-core/Formula/bzip2.rb:10:in `block in <class:Bzip2>'
Please report this to the homebrew/core tap!

Warning: Calling fails_with :llvm is deprecated!
There is no replacement.
/home/py/.linuxbrew/Library/Taps/homebrew/homebrew-core/Formula/pcre.rb:28:in `<class:Pcre>'
Please report this to the homebrew/core tap!

Warning: Calling fails_with :llvm is deprecated!
There is no replacement.
/home/py/.linuxbrew/Library/Taps/homebrew/homebrew-core/Formula/pcre.rb:28:in `<class:Pcre>'
Please report this to the homebrew/core tap!

Warning: Calling fails_with :llvm is deprecated!
There is no replacement.
/home/py/.linuxbrew/Library/Taps/homebrew/homebrew-core/Formula/pcre.rb:28:in `<class:Pcre>'
Please report this to the homebrew/core tap!

Warning: Calling fails_with :llvm is deprecated!
There is no replacement.
/home/py/.linuxbrew/Library/Taps/homebrew/homebrew-core/Formula/pcre.rb:28:in `<class:Pcre>'
Please report this to the homebrew/core tap!

Warning: Calling fails_with :llvm is deprecated!
There is no replacement.
/home/py/.linuxbrew/Library/Taps/homebrew/homebrew-core/Formula/pixman.rb:22:in `<class:Pixman>'
Please report this to the homebrew/core tap!

Warning: Calling fails_with :llvm is deprecated!
There is no replacement.
/home/py/.linuxbrew/Library/Taps/homebrew/homebrew-core/Formula/pixman.rb:22:in `<class:Pixman>'
Please report this to the homebrew/core tap!

Warning: Calling fails_with :llvm is deprecated!
There is no replacement.
/home/py/.linuxbrew/Library/Taps/homebrew/homebrew-core/Formula/pixman.rb:22:in `<class:Pixman>'
Please report this to the homebrew/core tap!

Warning: Calling fails_with :llvm is deprecated!
There is no replacement.
/home/py/.linuxbrew/Library/Taps/homebrew/homebrew-core/Formula/pixman.rb:22:in `<class:Pixman>'
Please report this to the homebrew/core tap!

Warning: Calling fails_with :llvm is deprecated!
There is no replacement.
/home/py/.linuxbrew/Library/Taps/homebrew/homebrew-core/Formula/glib.rb:24:in `<class:Glib>'
Please report this to the homebrew/core tap!

Warning: Calling fails_with :llvm is deprecated!
There is no replacement.
/home/py/.linuxbrew/Library/Taps/homebrew/homebrew-core/Formula/glib.rb:24:in `<class:Glib>'
Please report this to the homebrew/core tap!

Warning: Calling fails_with :llvm is deprecated!
There is no replacement.
/home/py/.linuxbrew/Library/Taps/homebrew/homebrew-core/Formula/glib.rb:24:in `<class:Glib>'
Please report this to the homebrew/core tap!

Warning: Calling fails_with :llvm is deprecated!
There is no replacement.
/home/py/.linuxbrew/Library/Taps/homebrew/homebrew-core/Formula/glib.rb:24:in `<class:Glib>'
Please report this to the homebrew/core tap!

Warning: Calling fails_with :llvm is deprecated!
There is no replacement.
/home/py/.linuxbrew/Library/Taps/homebrew/homebrew-core/Formula/libevent.rb:53:in `<class:Libevent>'
Please report this to the homebrew/core tap!

Warning: Calling fails_with :llvm is deprecated!
There is no replacement.
/home/py/.linuxbrew/Library/Taps/homebrew/homebrew-core/Formula/libevent.rb:53:in `<class:Libevent>'
Please report this to the homebrew/core tap!

Warning: Calling fails_with :llvm is deprecated!
There is no replacement.
/home/py/.linuxbrew/Library/Taps/homebrew/homebrew-core/Formula/libevent.rb:53:in `<class:Libevent>'
Please report this to the homebrew/core tap!

Warning: Calling fails_with :llvm is deprecated!
There is no replacement.
/home/py/.linuxbrew/Library/Taps/homebrew/homebrew-core/Formula/libevent.rb:53:in `<class:Libevent>'
Please report this to the homebrew/core tap!
sjackman commented 6 years ago

Please report…

cd /home/py/.linuxbrew/Library/Taps/homebrew/homebrew-core
git remote -v
git log --oneline -n3
git pull --ff-only
git log --oneline -n3
pengyu commented 6 years ago

Here are what I have.

$ cd /home/py/.linuxbrew/Library/Taps/homebrew/homebrew-core
$ git remote -v
origin  https://github.com/Linuxbrew/brew.git (fetch)
origin  https://github.com/Linuxbrew/brew.git (push)
$ git log --oneline -n3
851177a docs: update gems. (#569)
c85a991 Python.user_site_packages: Check python suceeds [Linux] (#563)
77a15dc Merge tag Homebrew/1.4.3 into Linuxbrew/master
$ git pull --ff-only
Already up-to-date.
$ git log --oneline -n3
851177a docs: update gems. (#569)
c85a991 Python.user_site_packages: Check python suceeds [Linux] (#563)
77a15dc Merge tag Homebrew/1.4.3 into Linuxbrew/master
sjackman commented 6 years ago

Try…

which -a brew
cd /home/py/.linuxbrew/Library/Taps/homebrew/homebrew-core
git remote origin set-url https://github.com/Linuxbrew/homebrew-core
git pull --ff-only
git log --oneline -n3
pengyu commented 6 years ago

@sjackman OK, I deleted /home/py/.linuxbrew/Library/Taps/homebrew/homebrew-core and cloned https://github.com/Linuxbrew/homebrew-core. Now it works.

$ brew upgrade go 
==> Upgrading 1 outdated package, with result:
go 1.9.2
==> Upgrading go 
==> Downloading https://storage.googleapis.com/golang/go1.9.2.src.tar.gz
######################################################################## 100.0%
==> Downloading https://storage.googleapis.com/golang/go1.7.linux-amd64.tar.gz
Already downloaded: /home/py/.cache/Homebrew/go--gobootstrap-1.7.tar.gz
==> ./make.bash --no-clean
sjackman commented 6 years ago

Great. Glad to hear it, @pengyu.