Closed channprj closed 8 years ago
sjackman
commented
8 years ago Illegal instruction (core dumped)
I believe your CPU does not support an instruction used in one of the precompiled bottles, possibly zlib.
CPU: quad-core 64-bit 0x1005Try
brew reinstall zlib -s
brew install opensslThis issue will likely come up again with other packages. You'll probably want to set
export HOMEBREW_BUILD_FROM_SOURCE=1Do you know what make and model of CPU you have?
sjackman
commented
8 years ago brew doctor should check for an unknown CPU model and report it.
channprj
commented
8 years ago Thank you for your advice, but it doesn't work. Same errors occur.
channprj@ubt-chann:~ » brew doctor
Your system is ready to brew.and... my CPU is here.
processor : 0
vendor_id : AuthenticAMD
cpu family : 16
model : 5
model name : AMD Athlon(tm) II X4 645 Processor
stepping : 3
microcode : 0x10000c8
cpu MHz : 3100.000
cache size : 512 KB
physical id : 0
siblings : 4
core id : 0
cpu cores : 4
apicid : 0
initial apicid : 0
fpu : yes
fpu_exception : yes
cpuid level : 5
wp : yes
flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2 ht syscall nx mmxext fxsr_opt pdpe1gb rdtscp lm 3dnowext 3dnow constant_tsc rep_good nopl nonstop_tsc extd_apicid pni monitor cx16 popcnt lahf_lm cmp_legacy svm extapic cr8_legacy abm sse4a misalignsse 3dnowprefetch osvw ibs skinit wdt hw_pstate npt lbrv svm_lock nrip_save vmmcall
bugs : tlb_mmatch fxsave_leak sysret_ss_attrs
bogomips : 6228.11
TLB size : 1024 4K pages
clflush size : 64
cache_alignment : 64
address sizes : 48 bits physical, 48 bits virtual
power management: ts ttp tm stc 100mhzsteps hwpstate
processor : 1
vendor_id : AuthenticAMD
cpu family : 16
model : 5
model name : AMD Athlon(tm) II X4 645 Processor
stepping : 3
microcode : 0x10000c8
cpu MHz : 2400.000
cache size : 512 KB
physical id : 0
siblings : 4
core id : 1
cpu cores : 4
apicid : 1
initial apicid : 1
fpu : yes
fpu_exception : yes
cpuid level : 5
wp : yes
flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2 ht syscall nx mmxext fxsr_opt pdpe1gb rdtscp lm 3dnowext 3dnow constant_tsc rep_good nopl nonstop_tsc extd_apicid pni monitor cx16 popcnt lahf_lm cmp_legacy svm extapic cr8_legacy abm sse4a misalignsse 3dnowprefetch osvw ibs skinit wdt hw_pstate npt lbrv svm_lock nrip_save vmmcall
bugs : tlb_mmatch fxsave_leak sysret_ss_attrs
bogomips : 6228.11
TLB size : 1024 4K pages
clflush size : 64
cache_alignment : 64
address sizes : 48 bits physical, 48 bits virtual
power management: ts ttp tm stc 100mhzsteps hwpstate
processor : 2
vendor_id : AuthenticAMD
cpu family : 16
model : 5
model name : AMD Athlon(tm) II X4 645 Processor
stepping : 3
microcode : 0x10000c8
cpu MHz : 800.000
cache size : 512 KB
physical id : 0
siblings : 4
core id : 2
cpu cores : 4
apicid : 2
initial apicid : 2
fpu : yes
fpu_exception : yes
cpuid level : 5
wp : yes
flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2 ht syscall nx mmxext fxsr_opt pdpe1gb rdtscp lm 3dnowext 3dnow constant_tsc rep_good nopl nonstop_tsc extd_apicid pni monitor cx16 popcnt lahf_lm cmp_legacy svm extapic cr8_legacy abm sse4a misalignsse 3dnowprefetch osvw ibs skinit wdt hw_pstate npt lbrv svm_lock nrip_save vmmcall
bugs : tlb_mmatch fxsave_leak sysret_ss_attrs
bogomips : 6228.11
TLB size : 1024 4K pages
clflush size : 64
cache_alignment : 64
address sizes : 48 bits physical, 48 bits virtual
power management: ts ttp tm stc 100mhzsteps hwpstate
processor : 3
vendor_id : AuthenticAMD
cpu family : 16
model : 5
model name : AMD Athlon(tm) II X4 645 Processor
stepping : 3
microcode : 0x10000c8
cpu MHz : 800.000
cache size : 512 KB
physical id : 0
siblings : 4
core id : 3
cpu cores : 4
apicid : 3
initial apicid : 3
fpu : yes
fpu_exception : yes
cpuid level : 5
wp : yes
flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2 ht syscall nx mmxext fxsr_opt pdpe1gb rdtscp lm 3dnowext 3dnow constant_tsc rep_good nopl nonstop_tsc extd_apicid pni monitor cx16 popcnt lahf_lm cmp_legacy svm extapic cr8_legacy abm sse4a misalignsse 3dnowprefetch osvw ibs skinit wdt hw_pstate npt lbrv svm_lock nrip_save vmmcall
bugs : tlb_mmatch fxsave_leak sysret_ss_attrs
bogomips : 6228.11
TLB size : 1024 4K pages
clflush size : 64
cache_alignment : 64
address sizes : 48 bits physical, 48 bits virtual
power management: ts ttp tm stc 100mhzsteps hwpstateThank you for your help.
sjackman
commented
8 years ago The default optimization flags are -march=core2 -msse4, which are inappropriate for your CPU. See https://github.com/Linuxbrew/linuxbrew/blob/master/Library/Homebrew/extend/ENV/std.rb#L11
You can either change that value, or you can add a line to OPTIMIZATION_FLAGS in Library/Homebrew/os/linux/hardware.rb. See https://github.com/Linuxbrew/linuxbrew/blob/master/Library/Homebrew/os/linux/hardware.rb#L6
Try this untested patch.
diff --git a/Library/Homebrew/os/linux/hardware.rb b/Library/Homebrew/os/linux/hardware.rb
index 8e44693..cee0ff0 100644
--- a/Library/Homebrew/os/linux/hardware.rb
+++ b/Library/Homebrew/os/linux/hardware.rb
@@ -3,6 +3,7 @@ module LinuxCPUs
:penryn => "-march=core2 -msse4.1",
:core2 => "-march=core2",
:core => "-march=prescott",
+ :"0x1005" => "",
:arm => "",
}.freeze
def optimization_flags
alekseysidorov
commented
8 years ago The issue is also affected for me.
Architecture: x86_64
CPU op-mode(s): 32-bit, 64-bit
Byte Order: Little Endian
CPU(s): 6
On-line CPU(s) list: 0-5
Thread(s) per core: 1
Core(s) per socket: 6
Socket(s): 1
NUMA node(s): 1
Vendor ID: AuthenticAMD
CPU family: 16
Model: 10
Model name: AMD Phenom(tm) II X6 1090T Processor
Stepping: 0
CPU MHz: 800.000
CPU max MHz: 3200,0000
CPU min MHz: 800,0000
BogoMIPS: 6428.03
Virtualization: AMD-V
L1d cache: 64K
L1i cache: 64K
L2 cache: 512K
L3 cache: 6144K
NUMA node0 CPU(s): 0-5
Flags: fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2 ht syscall nx mmxext fxsr_opt pdpe1gb rdtscp lm 3dnowext 3dnow constant_tsc rep_good nopl nonstop_tsc extd_apicid aperfmperf pni monitor cx16 popcnt lahf_lm cmp_legacy svm extapic cr8_legacy abm sse4a misalignsse 3dnowprefetch osvw ibs skinit wdt cpb hw_pstate npt lbrv svm_lock nrip_save pausefilter vmmcallIn my opinion it need to add proper Amd support although Apple does not like this hardware. Phenom processors are not too old and slow.
channprj
commented
8 years ago ...
:core => "-march=prescott",
+ :"0x1005" => "",
:arm => "",
...I tested your new patch after $ brew update; brew doctor, but It's same as before.
I'm going to find the cause of error... :sob:. Thank you for your advise.
sjackman
commented
8 years ago You'll have to remove all installed packages and start from scratch.
brew remove `brew list`
export HOMEBREW_BUILD_FROM_SOURCE=1
brew install openssl -vI'm not positive that my above patch is exactly right. I haven't tested it. Try
diff --git a/Library/Homebrew/extend/ENV/std.rb b/Library/Homebrew/extend/ENV/std.rb
index 037c8bb..36122b2 100644
--- a/Library/Homebrew/extend/ENV/std.rb
+++ b/Library/Homebrew/extend/ENV/std.rb
@@ -8,7 +8,7 @@ module Stdenv
# @private
SAFE_CFLAGS_FLAGS = "-w -pipe"
- DEFAULT_FLAGS = "-march=core2 -msse4"
+ DEFAULT_FLAGS = ""
def self.extended(base)
unless ORIGINAL_PATHS.include? HOMEBREW_PREFIX/"bin"Same error.
test sslv3
Available compression methods:
1: zlib compression
Illegal instruction (core dumped)
make[1]: *** [test_ssl] Error 1
make[1]: Leaving directory `/tmp/openssl20160411-9788-1n1lsgw/openssl-1.0.2g/test'
make: *** [tests] Error 2Sorry, I'm running out of ideas.
There are two workarounds
brew install openssl --without-testYou can try disabling zlib for openssl.
diff --git a/Formula/openssl.rb b/Formula/openssl.rb
index 3c57f5a..3fca180 100644
--- a/Formula/openssl.rb
+++ b/Formula/openssl.rb
@@ -46,7 +46,7 @@ class Openssl < Formula
--prefix=#{prefix}
--openssldir=#{openssldir}
no-ssl2
- zlib-dynamic
+ no-zlib
shared
enable-cms
]no-zlib does not works for me.
Available compression methods:
NONE
Illegal instruction
Makefile:298: ошибка выполнения рецепта для цели «test_ssl»
make[1]: *** [test_ssl] Ошибка 1
make[1]: выход из каталога «/tmp/openssl20160415-11542-n9qiy0/openssl-1.0.2g/test»
Makefile:460: ошибка выполнения рецепта для цели «tests»
make: *** [tests] Ошибка 2
==> Formula
Path: /home/aleksey/.linuxbrew/Library/Formula/openssl.rb==> Configuration
HOMEBREW_VERSION: 0.9.5
ORIGIN: https://github.com/Homebrew/linuxbrew
HEAD: 284ee0ef39216b2c7b1e043b5df233c717bbf9a8
Last commit: 9 минут назад
HOMEBREW_PREFIX: /home/aleksey/.linuxbrew
HOMEBREW_REPOSITORY: /home/aleksey/.linuxbrew
HOMEBREW_CELLAR: /home/aleksey/.linuxbrew/Cellar
HOMEBREW_BOTTLE_DOMAIN: https://linuxbrew.bintray.com
CPU: 6-core 64-bit phenom
Kernel: Linux 4.4.0-1-amd64 x86_64 GNU/Linux
OS: Debian GNU/Linux unstable (sid)
Codename: sid
OS glibc: 2.22
OS gcc: 5.3.1
Linuxbrew glibc: N/A
Linuxbrew gcc: N/A
Clang: 3.7 build 0
X11: 2.7.8 => /usr
System Ruby: 2.3.0 => /usr/bin/ruby2.3
Perl: /usr/bin/perl
Python: /usr/bin/python => /usr/bin/python2.7
Ruby: /usr/bin/ruby => /usr/bin/ruby2.3
Java: Picked up _JAVA_OPTIONS: -Dawt.useSystemAAFontSettings=gasp
==> ENV
CC: /usr/bin/gcc-5
CXX: /usr/bin/g++-5
OBJC: /usr/bin/gcc-5
OBJCXX: /usr/bin/g++-5
CFLAGS: -Os -w -pipe -march=core2
CXXFLAGS: -Os -w -pipe -march=core2
CPPFLAGS: -isystem/home/aleksey/.linuxbrew/include
LDFLAGS: -L/home/aleksey/.linuxbrew/lib -Wl,--dynamic-linker=/home/aleksey/.linuxbrew/lib/ld.so -Wl,-rpath,/home/aleksey/.linuxbrew/lib
CMAKE_PREFIX_PATH: /home/aleksey/.linuxbrew
PKG_CONFIG_LIBDIR: /home/aleksey/.linuxbrew/lib/pkgconfig
HOMEBREW_BUILD_FROM_SOURCE: 1
PATH: /home/aleksey/.linuxbrew/bin:/home/aleksey/.cargo/bin:/home/aleksey/.linuxbrew/sbin:/home/aleksey/Applications/Android/sdk/platform-tools:/usr/local/bin:/usr/bin:/bsr/local/games:/usr/games:/home/aleksey/.linuxbrew/Library/ENV/scm
CPATH: /home/aleksey/.linuxbrew/include
LD_LIBRARY_PATH: /home/aleksey/.linuxbrew/Cellar/openssl/1.0.2g/lib:/home/aleksey/.linuxbrew/Cellar/openssl/1.0.2g
LD_RUN_PATH: /home/aleksey/.linuxbrew/lib
LIBRARY_PATH: /home/aleksey/.linuxbrew/lib
Error: openssl 1.0.2g did not buildI always thought that mach=core2 is enough for amd k10 family.
sjackman
commented
8 years ago If you brew install openssl --without-test does brew test openssl work?
sjackman
commented
8 years ago If you know how to use gdb, you could determine which instruction (opcode) is causing the failure to help debugging.
ulimit -c unlimited
brew install openssl -dv
# select shell
gdb test-executable core-file
x/iChange test-executable and core-file to the appropriate file names.
alekseysidorov
commented
8 years ago I did not find the file that causes the fall in openssl tests, but I found illegal instruction in python.
0x7ffff6478b36 <strop_maketrans+550> pshufb %xmm5,%xmm2 It seems like k10 does not support SSSE3. This is similar to the bug report core.27879.zip
sjackman
commented
8 years ago The default optimization flags are DEFAULT_FLAGS = "-march=core2 -msse4".
See above for suggestions on how to change either DEFAULT_FLAGS or to change the optimization flags specifically for your processor.
tseemann
commented
8 years ago @alekseysidorov this site may be helpful: https://wiki.gentoo.org/wiki/Safe_CFLAGS
@sjackman I thought -march=native will auto-detect your CPU and even choose appropriate SSE/AVX flags?
@sjackman I've just discovered I can use -march=core-avx2 for my Haswell Xeons. Are there any env vars we can set that affect ENV.std ?
sjackman
commented
8 years ago @sjackman I thought -march=native will auto-detect your CPU and even choose appropriate SSE/AVX flags?
Yes, it does. Thanks for the reminder. The default CFLAGS should definitely be -march=native. The default bottle flags should continue to be -march=core2.
Homebrew superenv uses -march=native, but stdenv (which Linuxbrew uses) does not. The historical reason was that GCC 4.2 which was used by Mac OS before clang was the default compiler, didn't support -march=native. See https://github.com/Homebrew/legacy-homebrew/issues/14204
sjackman
commented
8 years ago @sjackman I've just discovered I can use -march=core-avx2 for my Haswell Xeons. Are there any env vars we can set that affect ENV.std ?
No, not that I'm aware of. My suggestion is to change DEFAULT_FLAGS to -march=native. What does brew config |grep CPU report on your machine?
sjackman
commented
8 years ago -march=native was added to GCC in 4.2, so we can safely use it. https://gcc.gnu.org/gcc-4.2/changes.html
Apple GCC 4.2 must not have had it, I guess.
alekseysidorov
commented
8 years ago For unknown reasons linuxbrew interprets phenom II as core2 processor family. If I replace
:core2 => "-march=core2",by
:core2 => "-march=native",compiling is finished without errors.
sjackman
commented
8 years ago That code lives here, if you want to troubleshoot it: https://github.com/Linuxbrew/linuxbrew/blob/master/Library/Homebrew/os/linux/hardware.rb#L59
alekseysidorov
commented
8 years ago In my opinion the problem is there: https://github.com/Linuxbrew/linuxbrew/blob/master/Library/Homebrew/extend/ENV/std.rb#L368 On 64 bit oldest cpu means core2 https://github.com/Linuxbrew/linuxbrew/blob/master/Library/Homebrew/hardware.rb#L76
sjackman
commented
8 years ago Yep, that's the problem, and this line in particular:
elsif Hardware::CPU.intel? && !Hardware::CPU.sse4?https://github.com/Linuxbrew/linuxbrew/blob/master/Library/Homebrew/extend/ENV/std.rb#L364
That line should be disable on Linux. Try:
elsif OS.mac? && Hardware::CPU.intel? && !Hardware::CPU.sse4?If that works for you, please submit a pull request.
alekseysidorov
commented
8 years ago sjackman
commented
8 years ago @channprj Does pull request #1094 fix your issue?
Thank you for any help in advance. I closely examine the issues, but I can't find solution.
I'm going to install pyenv or pip, but brew doesn't work. (I installed it another way, but I want to use it on brew.)
Logs are here:
...and this is my system version.
and specific logs are on the gist. (Lots of lines indicate missing items in gist, but that items are in my computer.)