util-linux: Conflicts with bash-completions

[Muflone82]

I all,

i'm trying to install "util-linux" but brew can't download it.

curl: (35) Cannot communicate securely with peer: no common encryption algorithm(s).
Error: Failed to download resource "util-linux"
Download failed: https://www.kernel.org/pub/linux/utils/util-linux/v2.27/util-linux-2.27.1.tar.xz

I tried with the command:

brew fetch util-linux

but I had the same answer

==> Downloading https://www.kernel.org/pub/linux/utils/util-linux/v2.27/util-lin

curl: (35) Cannot communicate securely with peer: no common encryption algorithm(s).
Error: Failed to download resource "util-linux"
Download failed: https://www.kernel.org/pub/linux/utils/util-linux/v2.27/util-linux-2.27.1.tar.xz

Can yuo help me? Thx

[maxim-belkin]

Can yuo help me? Thx

While we are waiting for yuo to help you out, I was wondering if you could run the following code and post the results here

brew update && cd "$(brew --repo)" && git fetch && git reset --hard origin/master && brew update
brew doctor

[sjackman]

Also try

curl -k -o `brew --cache -s curl` https://www.kernel.org/pub/linux/utils/util-linux/v2.27/util-linux-2.27.1.tar.xz
brew fetch curl
brew install curl

[Muflone82]

I ran brew update && cd "$(brew --repo)" && git fetch && git reset --hard origin/master && brew update

and the result was

Already up-to-date.
remote: Counting objects: 229, done.
remote: Compressing objects: 100% (106/106), done.
remote: Total 229 (delta 116), reused 229 (delta 116), pack-reused 0
Receiving objects: 100% (229/229), 137.23 KiB | 101.00 KiB/s, done.
Resolving deltas: 100% (116/116), done.
From https://github.com/Linuxbrew/brew * [new branch]      gh-pages   -> origin/gh-pages
HEAD is now at b75ca7b CONTRIBUTING.md: Update Contributing to Linuxbrew
Already up-to-date.

then I tried to run again brew install util-linux

This time I downloaded the module but didn't work the installation :-(

==> Downloading https://www.kernel.org/pub/linux/utils/util-linux/v2.27/util-lin
Already downloaded: /home/marcelletti/.cache/Homebrew/util-linux-2.27.1.tar.xz
==> ./configure --disable-silent-rules --prefix=/home/marcelletti/.linuxbrew/Cellar/util-linux/2.27.1_1 --disable-use-tty-group --disable-kill --disab
==> make install
Last 15 lines from /home/marcelletti/.cache/Homebrew/Logs/util-linux/02.make:
     during execution  - add LIBDIR to the LD_RUN_PATH' environment variable
     during linking - use the -Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to /etc/ld.so.conf
See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ----------------------------------------------------------------------
make[3]: Leaving directory /tmp/util-linux-20161110-24695-tl5fbu/util-linux-2.27.1'
make[2]: *** [install-am] Error 2
make[2]: Leaving directory /tmp/util-linux-20161110-24695-tl5fbu/util-linux-2.27.1'
make[1]: *** [install-recursive] Error 1
make[1]: Leaving directory /tmp/util-linux-20161110-24695-tl5fbu/util-linux-2.27.1'
make: *** [install] Error 2
READ THIS: https://github.com/Linuxbrew/brew/blob/master/docs/Troubleshooting.md#troubleshooting
If reporting this issue please do so at (not Homebrew/brew):
  https://github.com/Linuxbrew/homebrew-core/issues

curl-7.50.3 already installed

[maxim-belkin]

what do you get if you do: cd $(brew --repo) && git remote -v && brew tap?

[Muflone82]

I obtain

origin https://github.com/Linuxbrew/brew (fetch)
origin https://github.com/Linuxbrew/brew (push)
homebrew/dupes
homebrew/core
homebrew/science

[maxim-belkin]

brew gist-logs util-linux and post the url here.

[Muflone82]

The url is:

https://gist.github.com/11cf8582439d2db7109b47e746ff5c0b

[maxim-belkin]

So, your problem is:

/usr/bin/install: cannot remove ‘/usr/share/bash-completion/completions/blkid’: Permission denied
/usr/bin/install: cannot remove ‘/usr/share/bash-completion/completions/col’: Permission denied
/usr/bin/install: cannot remove ‘/usr/share/bash-completion/completions/colcrt’: Permission denied
/usr/bin/install: cannot remove ‘/usr/share/bash-completion/completions/colrm’: Permission denied
/usr/bin/install: cannot remove ‘/usr/share/bash-completion/completions/column’: Permission denied
/usr/bin/install: cannot remove ‘/usr/share/bash-completion/completions/findmnt’: Permission denied
/usr/bin/install: cannot remove ‘/usr/share/bash-completion/completions/flock’: Permission denied
/usr/bin/install: cannot remove ‘/usr/share/bash-completion/completions/getopt’: Permission denied
/usr/bin/install: cannot remove ‘/usr/share/bash-completion/completions/hexdump’: Permission denied
/usr/bin/install: cannot remove ‘/usr/share/bash-completion/completions/ipcrm’: Permission denied
/usr/bin/install: cannot remove ‘/usr/share/bash-completion/completions/ipcs’: Permission denied
/usr/bin/install: cannot remove ‘/usr/share/bash-completion/completions/isosize’: Permission denied
/usr/bin/install: cannot remove ‘/usr/share/bash-completion/completions/logger’: Permission denied
/usr/bin/install: cannot remove ‘/usr/share/bash-completion/completions/look’: Permission denied
/usr/bin/install: cannot create regular file ‘/usr/share/bash-completion/completions/lsipc’: Permission denied
/usr/bin/install: cannot remove ‘/usr/share/bash-completion/completions/mcookie’: Permission denied
/usr/bin/install: cannot remove ‘/usr/share/bash-completion/completions/mkfs’: Permission denied
/usr/bin/install: cannot remove ‘/usr/share/bash-completion/completions/mkswap’: Permission denied
/usr/bin/install: cannot remove ‘/usr/share/bash-completion/completions/namei’: Permission denied
/usr/bin/install: cannot remove ‘/usr/share/bash-completion/completions/prlimit’: Permission denied
/usr/bin/install: cannot remove ‘/usr/share/bash-completion/completions/readprofile’: Permission denied
/usr/bin/install: cannot remove ‘/usr/share/bash-completion/completions/renice’: Permission denied
/usr/bin/install: cannot remove ‘/usr/share/bash-completion/completions/rev’: Permission denied
/usr/bin/install: cannot remove ‘/usr/share/bash-completion/completions/script’: Permission denied
/usr/bin/install: cannot remove ‘/usr/share/bash-completion/completions/scriptreplay’: Permission denied
/usr/bin/install: cannot remove ‘/usr/share/bash-completion/completions/setsid’: Permission denied
/usr/bin/install: cannot remove ‘/usr/share/bash-completion/completions/tailf’: Permission denied
/usr/bin/install: cannot remove ‘/usr/share/bash-completion/completions/whereis’: Permission denied
/usr/bin/install: cannot remove ‘/usr/share/bash-completion/completions/wipefs’: Permission denied
/usr/bin/install: cannot remove ‘/usr/share/bash-completion/completions/fsck’: Permission denied
/usr/bin/install: cannot create regular file ‘/usr/share/bash-completion/completions/mkfs.bfs’: Permission denied
/usr/bin/install: cannot remove ‘/usr/share/bash-completion/completions/fsck.minix’: Permission denied
/usr/bin/install: cannot remove ‘/usr/share/bash-completion/completions/mkfs.minix’: Permission denied
/usr/bin/install: cannot remove ‘/usr/share/bash-completion/completions/fsck.cramfs’: Permission denied
/usr/bin/install: cannot remove ‘/usr/share/bash-completion/completions/mkfs.cramfs’: Permission denied
/usr/bin/install: cannot remove ‘/usr/share/bash-completion/completions/addpart’: Permission denied
/usr/bin/install: cannot remove ‘/usr/share/bash-completion/completions/delpart’: Permission denied
/usr/bin/install: cannot remove ‘/usr/share/bash-completion/completions/resizepart’: Permission denied
/usr/bin/install: cannot remove ‘/usr/share/bash-completion/completions/partx’: Permission denied
/usr/bin/install: cannot remove ‘/usr/share/bash-completion/completions/raw’: Permission denied

[maxim-belkin]

please report the result of:

direct=""
for dir in $(echo "/usr/share/bash-completion/completions" | tr "/" " "); do
    direct="$direct/$dir";
    [ ! -d "$direct" ] || ls -ld $direct;
done

[maxim-belkin]

Also, you can safely remove Debian's snp-sites because:

$ brew desc -s snp
parsnp: Microbial core genome alignment and SNP detection
snp-sites: Find SNP sites in a multi FASTA alignment file
snpeff: Genetic variant annotation and effect prediction toolbox

[Muflone82]

Why permission denied? Must I be root to run this?

Result is:

ls: invalid option -- 'e'
Try 'ls --help' for more information.
ls: invalid option -- 'e'
Try 'ls --help' for more information.
ls: invalid option -- 'e'
Try 'ls --help' for more information.
ls: invalid option -- 'e'
Try 'ls --help' for more `information.

[maxim-belkin]

no, just remove e from ls -led. Basically, run:

direct=""
for dir in $(echo "/usr/share/bash-completion/completions" | tr "/" " "); do
    direct="$direct/$dir";
    [ ! -d "$direct" ] || ls -ld $direct;
done

[Muflone82]

drwxr-xr-x. 12 root root 4096 Dec 12  2013 /usr
drwxr-xr-x. 296 root root 12288 Nov  9 13:24 /usr/share
drwxr-xr-x. 4 root root 4096 Nov 11  2014 /usr/share/bash-completion
drwxr-xr-x. 2 root root 20480 Nov  8 13:27 /usr/share/bash-completion/completions

Grazie :-)

[Muflone82]

Must I change the permission of the dir /usr/share/bash-completion?

chmod -R 777 /usr/share/bash-completion ?

[maxim-belkin]

Must I change the permission of the dir /usr/share/bash-completion?

no, you must not. Give us some time to figure out what is going on.

[maxim-belkin]

Problems:

Bash completions:  /usr/share/bash-completion/completions
Systemd support:   no
...
Package tinfo was not found in the pkg-config search path
Package libuser was not found in the pkg-config search path
Package libsystemd was not found in the pkg-config search path
Package libsystemd-daemon was not found in the pkg-config search path
Package libsystemd-journal was not found in the pkg-config search path
Package python-2.7 was not found in the pkg-config search path

[maxim-belkin]

In my installation, I've got:

Bash completions:  ${datarootdir}/bash-completion/completions
Systemd support:   yes

[maxim-belkin]

Can you post the result of the following two commands?

type -a pkg-config
pkg-config --variable=completionsdir bash-completion

[maxim-belkin]

can you remove bash-completion that was installed with apt-get?

[Muflone82]

Can you post the result of the following two commands? type -a pkg-config pkg-config --variable=completionsdir bash-completion

$ type -a pkg-config
pkg-config is /home/marcelletti/.linuxbrew/bin/pkg-config
pkg-config is /home/marcelletti/.linuxbrew/bin/pkg-config
pkg-config is /usr/bin/pkg-config
pkg-config is /bin/pkg-config

$ pkg-config --variable=completionsdir bash-completion
/usr/share/bash-completion/completions

[Muflone82]

can you remove bash-completion that was installed with apt-get?

Yes, I can; I installed bash-completion with yum because I have Fedora. If I remove bash-completion I will have a problem with another software?

[maxim-belkin]

No, you won't have any problems. Just no bash-completions. What happens is the following: During the installation of util-linux, pkg-config tries to determine if package bash-completions is installed. This is so in your case, but the location where bash-completions is installed is not writable by you (you did sudo yum install bash-completions). Because of that, installation fails. I think we should come up with a way of avoiding such errors but for now the easiest solution is to remove bash-completions using yum.

[Muflone82]

Good morning :-) Well, I have removed bash completion with yum and the I have installed util-linux without any problems!!!!

[malcook]

I am similarly afflicted while trying to install util-linux and wish not to remove system bash-completion. Any hope for me?

[sjackman]

Consider installing Linuxbrew in /home/linuxbrew/.linuxbrew/ if possible so that you can use precompiled binary packages (known as bottles) for non-relocatable formula like util-linux. Another possible workaround for you is brew install --force-bottle util-linux, but no promises.

The precompiled binary bottles of non-relocatable bottles can only be used if you install in /home/linuxbrew/.linuxbrew, otherwise they have to be built from source. See the documentation below, but wherever it reads /usr/local, which is for macOS, read instead /home/linuxbrew/.linuxbrew.

• http://docs.brew.sh/Installation.html#alternative-installs
• http://docs.brew.sh/FAQ.html#why-do-you-compile-everything
• http://docs.brew.sh/Bottles.html#cellar-cellar