search

ListerLab / TEPID

Transposable element polymorphism identification
GNU General Public License v3.0
32 stars 13 forks source link

tepid-discover was terminated #18

Open NathanInChina opened 4 years ago

NathanInChina commented 4 years ago

Hello, I am using tepid for the mutation analysis of transposable elements. When I did the first mapping, there was no problem; I got four files bam, bai, split.bam and umap.fastq; I was using the first When the second part of the command detects the presence of polymorphic TE, the program terminates in the middle.This is my command:tepid-discover -i --strict -p 6 -n exl -c exl.bam -s exl.split.bam -t ../../TE.bed,the log message is that 图片

NathanInChina commented 4 years ago

Processing exl Running paired-end mode Estimating mean insert size and coverage Warning: coverage may not be sufficiently high to reliably discover polymorphic TE insertions mean insert size = 213 bp, standard deviation = 137 bp coverage = 5x read length = 99 bp Processing split reads Finding discordant reads Terminated