Refactor prediction step to eliminate multiprocessing

LiuzLab / AI_MARRVEL

AI-MARRVEL (AIM) is an AI system for rare genetic disorder diagnosis

GNU General Public License v3.0

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Refactor prediction step to eliminate multiprocessing #33

Closed jylee-bcm closed 1 month ago

jylee-bcm commented 2 months ago

This work is main branch version for one of optimization works done in nextflow branch. It reduces the running time of 2 minutes and memory consumption of 30GB for demo.vcf.gz on elpaso server, this running time may differ by your machine.

For more details, please refer the link to https://github.com/hyunhwan-bcm/AI_MARRVEL/pull/2

hyunhwan-bcm commented 1 month ago

will be merged with nextflow_conversion