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LiuzLab / AI_MARRVEL

AI-MARRVEL (AIM) is an AI system for rare genetic disorder diagnosis
GNU General Public License v3.0
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Update README and Version Command #78

Closed jylee-bcm closed 2 months ago

jylee-bcm commented 2 months ago

Summary: This PR includes the following updates:

  1. README Updates:

    • Updated the AWS S3 sync command to point to the new S3 bucket (aim-data-dependencies-2.0-public).
    • Adjusted instructions to reflect the switch from a Docker-based setup to a Nextflow pipeline.

  2. Nextflow Pipeline Updates:

    • Added a --version flag to the pipeline, allowing users to check the pipeline version.
    • Updated nextflow.config to include the new version parameter.
    • Improved the usage instructions in nf_usage.txt to align with the new version flag.

These changes aim to keep the documentation current and improve the user experience with the pipeline.